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Detailed information on CNT30552106


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 2e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690487Oryza glaberrimaOryza sativa51.5763.2483.54559forward
CNT30679387Oryza glaberrimaTriticum urartu11.2524.8582.79122forward
CNT30109319Oryza glaberrimaOryza longistaminata29.788.7199.38322forward
CNT3099524Oryza glaberrimaOryza rufipogon26.7515.689.31290forward
CNT30578094Oryza glaberrimaOryza barthii8.8628.8387.596reverse complement
CNT30115639Oryza glaberrimaOryza nivara38.3835.7793.27416forward

Expression of CNT30552106

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MFLYPDDKLRNLRCTLSIPFPPPLATNPSPSPAIPPTPGHLCFPGDVSALRSAVNARCPGYASPSPCVLVRPEPQIQAPEPQD*

>peptide 2 (36 aa)
MIKFVRNWRGGKLSTMSFWRGHGNGRRWMMLMTASL*

Sequence

>CNT30552106
ATGCTGACTCAGCCGCCACGTCGGACAAAACCGGGTTGAAAACCATCGAGGGATCTCGGTGACCGGTTTTGTATAGTTTAGGGATCCCGCATATCTGGTT
TTGCGGTTTGAGAATGTTTTTGTATCCCGATGACAAGTTGAGGAACCTTCGGTGTACTTTGTCCATCCCCTTTCCTCCCCCTCTTGCCACGAACCCTTCG
CCGTCGCCGGCGATCCCACCGACTCCCGGCCACCTCTGCTTCCCCGGCGATGTCTCTGCTTTGCGCTCCGCCGTCAATGCGCGTTGCCCGGGCTATGCGT
CGCCTTCTCCCTGCGTCCTTGTGAGACCCGAGCCGCAAATCCAGGCCCCAGAGCCGCAGGATTGACAGAACTCGGGGAGGTCTCCTGATCCGGTGGTTGT
TCGGTTCGCTGCCCCCTCCTTGCATTGATAAAGGATTTTGTTGCAAGCCACTAGATATGGACCCATGAAACGGACGAGGACGGCATCTTACTGAAATAGT
ACAGCGAGGAGTACTCTGCACACCGTGGTTGGATGGAGATATACATCGCAACAACTGAACAAGATAAGGATGATTAGGATGAGTTGAGGTGGGTTATGGG
CTAAATTATAAAGGCTTCCACATATCACCTCCCATGTCTACTAATCTATTATCAAAGCAACCAAAGATCTAACTGCAGCTCCTGTTATATCAGGAGTCTG
AGCCAGGAATTGGAATGGAGCCTCTGGAGACGATCCTGCAATCCAATGGAAGCAAATACATGTATAGCTGAGCATGCACCAAATATGAGAAGTACTGTCC
TGTGCCGCTAAGGCAGGATATTGGGCCGAAGATATTTTCGGCAGCATTCTGGAGATGATCAAGTTCGTACGGAACTGGAGAGGCGGTAAACTGTCGACCA
TGAGCTTCTGGAGAGGGCATGGAAACGGAAGGAGATGGATGATGTTGATGACGGCCTCCTTGTAATCTATGGAGGTGACCTTGCAAGGCCCCAGAATTGG
GTGATGTAGCATGGTGTCTTGGCCAGAGCATGCTAGCCTCGCGCATGAAGCGCCGCATGCTGATGATGTATTGCTGGATTCAAG