Detailed information on CNT30552096


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 3e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690198Oryza glaberrimaOryza sativa20.625.5483.33120forward
CNT30674806Oryza glaberrimaSetaria viridis18.3825.5483.18107forward
CNT30222581Oryza glaberrimaHordeum vulgare18.2144.1786.79106forward
CNT30680010Oryza glaberrimaTriticum urartu25.640.2783.89149forward
CNT30149310Oryza glaberrimaBrachypodium distachyon18.2129.6187.74106forward
CNT30580303Oryza glaberrimaEchinochloa crusgalli18.2122.6589.62106forward

Expression of CNT30552096

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLSVLSHMNSSEQLTRLACWNPYCLYTLVE*

>peptide 2 (29 aa)
MVATSLMNSSPSPFEFSSIFTATGYHDVC*

>peptide 3 (35 aa)
MPCSFGAKSQEADNIDMMDSPYGCYFIDELFPLSF*

>peptide 4 (34 aa)
GSEFLFPLNISNTSMPKLKTSDLALQGQSPKSLG*

Sequence

>CNT30552096
GGATCTGAGTTCCTCTTTCCACTCAACATTTCCAACACTAGCATGCCAAAACTGAAAACATCTGACTTAGCTTTGCAAGGCCAAAGTCCGAAATCTTTGG
GCTGAAGCTGTGGTCTAGCAAAATGTTGTGAGGCTTGATATCAAAGTGGAGGATGCGCTGGCTGCACCCTTGATTGAATTATTAGGCATGAATTCATAAA
TAAGAGCATGCCTTGTTCCTTCGGAGCAAAATCCCAAGAGGCGGACAACATTGACATGATGGATTCTCCCTATGGTTGCTACTTCATTGATGAACTCTTC
CCCCTCTCCTTTTGAGTTCTCAAGCATCTTTACAGCAACAGGGTATCATGATGTCTGTTGAAACCACTTTGCAGTATAACGGGAGAATTGACACAAATGC
ATAAGGGGCTACCAAGTACAGGGACTGGCTTGCATTGCTGAGGCAAGAAATCGGGCCAAAAATGCTGTCTGTACTGTCCCATATGAACTCTTCTGAACAA
CTTACAAGACTTGCATGTTGGAACCCATATTGTTTGTACACACTGGTTGAATAATTTGCAGAAATTATCTTCTGAAGTGCGC