Detailed information on CNT30552053


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690818Oryza glaberrimaOryza sativa66.1849.5690.52675forward
CNT3099733Oryza glaberrimaOryza rufipogon45.9897.9191.9469forward

Expression of CNT30552053

Peptides detected in this lncRNA

>peptide 1 (73 aa)
RHTAAKFPRRPWGIGAFSCGKSGARRRWRCRTGRPRQGRGLWRWPHRAADAGTGMGGGSCLRVGLRFLTNWNE*

>peptide 2 (71 aa)
AHGSEVSAAAMGDWGLLLWEIRRPAEVAVPHRAAEAGTGPVAVAAPGGGCGDGDGRRLLPARRPKVPYKLE*

>peptide 3 (37 aa)
MVEAFPRMAGGSPKVSMLGSVTLPLLLILLTHGKELL*

>peptide 4 (64 aa)
GTRQRSFRGGHGGLGPSPVGNPAPGGGGGAAPGGRGRDGACGGGRTGRRMRGRGWAAAPACASA*

Sequence

>CNT30552053
CGGCACACGGCAGCGAAGTTTCCGCGGCGGCCATGGGGGATTGGGGCCTTCTCCTGTGGGAAATCCGGCGCCCGGCGGAGGTGGCGGTGCCGCACCGGGC
GGCCGAGGCAGGGACGGGGCCTGTGGCGGTGGCCGCACCGGGCGGCGGATGCGGGGACGGGGATGGGCGGCGGCTCCTGCCTGCGCGTCGGCCTAAGGTT
CCTTACAAATTGGAATGAGTAATAGTGAAGCCAATTGACGTACCATCACTTGAAGCAGTGGTGAAGTTCTCCACCTGGACACGGGAGTGCACCTCATGCG
TTAATAAGAGGTGGTAGCTGTGAGTCTGCGGTCTTCCGAAGCTGAAAAGTTGCCCGCCTGCCTTTGTGCAAGAACCAGTTGTTGAACATGGAGCTTAGGA
AATCTGGAGGCCTGAAGTTGGTGAACAGCGGTTTCGGTTCATCAACATTGTAGATGTCAAAAATTCTCTTTGAACTATAATTGCCGAGTTCAACAAAGTG
AAAGACTGGAAGAAGCTCTAGGTCTGTTCCGAGAGAGCTACTGGCACGAACGGTGATGCTGAGCCAAGAGTAGTTTCCGTCTATGGTTGAAGCGTTTCCC
AGGATGGCTGGAGGAAGCCCAAAGGTGTCAATGTTGGGAAGTGTTACCTTGCCGTTGCTACTCATATTATTAACCCATGGAAAGGAGTTGTTGTAAGAGG
CCCAGCTCTCCCAGAAGCGATCATACTGATCCGTTGGGAATCTGACCATGACAGGGGACAAAAGGAAGAAAAGATTATGCCAACGTAAATATATCAGGCT
TCAATATTGTCATTGCCGTTGTTTTTGCTAGGCTTTAAGGCTTAAGAATGTACTGATTCTAACCATAAATATTCGATATTCGGGATAGAATTATGTCAAA
CTTTGTAGGAATAAGTATATAGAATCTAATATGTTTATGATATTATATATGATAAAACTCTTCAACTCAAATCTACTCATATTATTTTTTGGCTAATCAT
TTGAGAAAGCATTGATAGTT