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Detailed information on CNT3055205


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 7e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534267Amborella trichopodaEucalyptus grandis63.0155.2687.43557forward
CNT30315809Amborella trichopodaCorylus avellana37.5652.4583.73332forward
CNT30269346Amborella trichopodaChenopodium quinoa62.7871.2581.98555forward
CNT30709832Amborella trichopodaGlycine max62.7861.0683.6555forward
CNT30544801Amborella trichopodaBrassica napus37.937.683.88335forward
CNT30145222Amborella trichopodaMedicago truncatula37.95082.39335forward
CNT30217700Amborella trichopodaKalanchoe fedtschenkoi39.2543.9883.57347forward
CNT30129909Amborella trichopodaCorymbia citriodora62.3375.7983.48551forward

Expression of CNT3055205

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWMTSSSLFLAKVSGSAERPAVSHP*

>peptide 2 (44 aa)
SGYIRTCIHSWFTFRAQSWWHRPKRCCSLGQQGGQPGSPMDPFQ*

>peptide 3 (37 aa)
MLTLPSPRTPIPNSDWVLAGTALPANAGEERAIVAMS*

>peptide 4 (87 aa)
NQVTFEHAFTRGSLSGHKVGGIGPSVVVHWVSKVVSQVLQWTLSSDNGLNKEPEHREHGKPAVLDLLDLQLGKGLRVLSQAQIAKML*

Sequence

>CNT3055205
AATCAGGTTACATTCGAACATGCATTCACTCGTGGTTCACTTTCCGGGCACAAAGTTGGTGGCATAGGCCCAAGCGTTGTTGTTCACTGGGTCAGCAAGG
TGGTCAGCCAGGTTCTCCAATGGACCCTTTCCAGTGACAATGGCCTGAACAAAGAACCCGAACATCGAGAACATGGCAAGCCGGCCGTTCTTGATCTCCT
TGACCTTCAGCTCGGCAAAGGCCTCAGGGTCCTCAGCCAGGCCCAGATAGCCAAGATGCTCTGAGCGTGCACCAGGCTCGGGTTCCCCAAGTAGTCGAGT
CCACCCTCACTGAAGATTTGAGCACCGGCCTTGAACCACACAGCCTCACCAAACTTGACGCCATTGCGAGAGAGTAGCTCTGGGAAAACGCATCCCAAAG
CACCGAGCATGGCCCACCTGCAGTGGATGACCTCGAGCTCTCTGTTCTTGGCGAAGGTCTCGGGGTCGGCCGAGAGGCCCGCAGTATCCCACCCGTAGTC
ACCGGGGAACTCCCCAGTAAGGTATGACGGGGGCTCCCCGGAGAACGGGCCGAGGTACTTGACTCTGTCGCGGCCGTACCATGGGCTTCCAGACACCGGG
GCCCTGCTAGTACTCTTCCTCATGCTCACTCTTCCGTCGCCACGAACACCGATTCCGAATTCAGATTGGGTGCTGGCAGGCACCGCCTTGCCGGCGAATG
CTGGGGAGGAGAGAGCCATCGTTGCCATGTCGTAGCCTTAACGTTGCTTAGAGAAAGGGGTTGGGTTGGGCTGTGCTGTGCTGTGTATAGAATGAGTGGT
GCTGTGCCTTTGCTTAAATAGTTGAAGGCTGGAGTGGCTCCTTATCCTAGGAAATCTTAATCTCGCATCTCATTGGGTTAAGAT