Detailed information on CNT30552039


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C7W2|ERF61_ARATH, E-value = 4e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30721242Oryza glaberrimaTriticum spelta33.2210.4890.7297forward

Expression of CNT30552039

Peptides detected in this lncRNA

>peptide 1 (78 aa)
CSGSGGDSGFGAGLVASSTDDGEGWANGAAEVEDDEDAVGVGVAELAVSKVPSHSLWPVKGLRISAAHLPHFRRRTPR*

>peptide 2 (96 aa)
LLRQRRRLWLWSWLGGFEHRRRRRVGEWRGRSRGRRGRSRSRGRRTSSVKGAKPLPMAGEGVADLRRPLAPLPEAHTTVAGAPNLADVGVGSDGGRR

>peptide 3 (41 aa)
LAPAAAATLALELAWWLRAQTTAKGGRMARQKSRTTRTQSE*

Sequence

>CNT30552039
CTTGCTCCGGCAGCGGCGGCGACTCTGGCTTTGGAGCTGGCTTGGTGGCTTCGAGCACAGACGACGGCGAAGGGTGGGCGAATGGCGCGGCAGAAGTCGA
GGACGACGAGGACGCAGTCGGAGTAGGGGTCGCCGAACTAGCAGTGTCAAAGGTGCCAAGCCACTCCCTATGGCCGGTGAAGGGGTTGCGGATCTCCGCC
GCCCACTTGCCCCACTTCCGGAGGCGCACACCACGGTAGCAGGTGCTCCCAACCTTGCCGATGTTGGCGTAGGCAGCGACGGTGGACGCCGG