Detailed information on CNT30552031


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000696, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689928Oryza glaberrimaOryza sativa59.5360.1799.29281forward
CNT3099732Oryza glaberrimaOryza rufipogon58.6956.7699.28277forward
CNT30574923Oryza glaberrimaOryza barthii59.5350.63100281forward
CNT30115624Oryza glaberrimaOryza nivara58.0559.57100274forward

Expression of CNT30552031

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MTNLWVADETFCQLRIDASILLHCFHLYKTTTLLARNHG*

>peptide 2 (53 aa)
MKLFVSCGLMLASYFTAFTFTRPPPCLQETMGDPSFFSLFSFTNQIKTWIKVI*

Sequence

>CNT30552031
TTTCTCAGTGGATTTACATTGGAGTTGCATTTTATTCAGGCATGAGGGGGGAAAAATGGCAGTTAAATTAGTTACAGGTTGATAGGAAATGGAGAGATTA
TTACAGGCCAAAGAGATCTTATTAATCTGGCCTGTTTTACAGTTTATTTTTTTTCTTTGATGACAAATTTATGGGTGGCTGATGAAACTTTTTGTCAGTT
GCGGATTGATGCTAGCATCTTACTTCACTGCTTTCACCTTTACAAGACCACCACCTTGCTTGCAAGAAACCATGGGTGATCCTTCTTTCTTTTCTCTTTT
TTCTTTCACCAATCAGATCAAAACCTGGATCAAAGTTATCTAACTCTTCAGGAAATGAGGTCATTTTCATAGTCGGCAGATTTGCAGTATCTCTAACGAA
TTCGCATCAGATTGGATGCACATCTTATGCTGAATCCCTTTACTCTCTTGTGTCCTAACCAGGTTTTGATAG