Detailed information on CNT30552010


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066602Oryza glaberrimaLeersia perrieri22.0912.7792.4171reverse complement
CNT30595602Oryza glaberrimaOryza meridionalis40.8323.3298.42316reverse complement
CNT30110001Oryza glaberrimaOryza longistaminata87.684.7597.49678forward
CNT3099937Oryza glaberrimaOryza rufipogon79.0744.2899.67612forward
CNT30574602Oryza glaberrimaOryza barthii10066.38100774forward
CNT30115488Oryza glaberrimaOryza nivara40.8324.999.68316reverse complement
CNT30550519Oryza glaberrimaOryza brachyantha38.523.7890.94298reverse complement

Expression of CNT30552010

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MKPSTASSMEDPSSGFLSTPNNGLTPLPCMQPMQCSHYFSASPVVLKTMPQRPMQRRYPLGRC*

>peptide 2 (56 aa)
MTICYYEHGNDYDSPFHHLVLIPGVSMTTLYRLLVPYQCIKKMVCISMYELETRRN*

>peptide 3 (39 aa)
MNSKHGEIKDLIKLPLPENLVARRLHAFLGMTNVVWSDL*

Sequence

>CNT30552010
GAAAAGGCACTCCACCACCTAAGCTTCCACTTTGTGAAAGAAACTTCATGTACTCTCTATAAATGAAACCAAGCACAGCATCTTCCATGGAGGACCCTTC
TTCTGGATTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTTCTCAGCTTCGCCGGTGGTGTTG
AAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACTTTGGCAGGTCTTCCTTCTCCAT
CTCGACAAGAAGATGGAATTACCTTCTTCGGCACAGTCTGGAAGCATCAGCTAGGTGCTGACCTAAAATAGTTATCCATAGATCCATAAGTCAATGAGCA
TGCCACAGCTCTGAAGCATAAAACATATAGACCTACACAAATACTTGTCAGAATTTATGAGTTATGACAATATGCTACTATGAACATGGAAACGACTATG
ATTCTCCATTTCACCATTTGGTTTTGATTCCAGGAGTTAGCATGACGACATTATATCGACTTCTTGTTCCCTATCAATGCATCAAAAAAATGGTTTGCAT
TTCCATGTATGAACTCGAAACACGGAGAAATTAAGGACCTAATAAAATTGCCATTACCAGAAAATCTAGTAGCTCGACGCCTCCACGCTTTCTTAGGGAT
GACCAATGTGGTGTGGTCGGATCTCTGAACCTCCCCGCGAGCCTCTGCTGGAAGCTGTTCATGTCCTCCCCTTC