Detailed information on CNT30552006


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690779Oryza glaberrimaOryza sativa16.4268.9799.31289reverse complement
CNT30390425Oryza glaberrimaTriticum turgidum16.8831.4398.32297forward
CNT30443845Oryza glaberrimaAegilops tauschii22.1680.4196.92390forward
CNT3081844Oryza glaberrimaBrassica juncea13.5834.1994.56239forward
CNT30627910Oryza glaberrimaDaucus carota8.2430.0291.72145forward
CNT30684485Oryza glaberrimaTriticum urartu16.885598.32297forward
CNT30100083Oryza glaberrimaOryza rufipogon15.3429.5199.26270forward

Expression of CNT30552006

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVPPQVDIRSNLVVSNPPKATKIFLGESVENLNYAHTFL*

>peptide 2 (49 aa)
MSLIRVIFWNSSSNSSRNGRYGKEQEEKERRNLSNSNKWCLHRLTSDPT*

>peptide 3 (84 aa)
MKRASAHFLLTNSPILRFVNKDNRSRSQSLKTLLPEGTLSVASFPCLLISFQEIGLPLQTHLLVNSLCKITRKFIVPELITDQV*

>peptide 4 (30 aa)
MFLCSSKESQGKQGPDSSDQVVTSTLQRVE*

>peptide 5 (32 aa)
MELLEVKTSEQKALHKKNCLTSFGIRPGRSRD*

>peptide 6 (37 aa)
CSSRFVSKTLSCKMSSSIFLLLSTDTTISSKLRLAGF*

Sequence

>CNT30552006
TGCTCTTCAAGATTTGTCAGTAAAACTTTAAGCTGCAAAATGTCATCTTCAATTTTCTTGTTGCTATCAACTGATACTACTATATCTTCAAAATTGAGAC
TTGCTGGTTTTTAAGGTCATGTCTGAAGAAATCAAGTTACACATTGATCTCCTCAGTCCATCTCAAATAACTTAGCTTCAGTTTCAGTGATGAGTGTGTC
CTTTAGAACAGTTGCTAGCTGGTCTCTAATATTGGAAAGGTGGGACTAGAGTCATATTTTTACAGTTGAGGTACATCTATATTTGTTCACAGTGTGAAAA
ACCATCTTGCATCAAACTGTTTGTCATCTATTTCCAAAACTGGGTCTCTTAGACAATTTAACTATGTTTTTGTGCTCATCAAAGGAAAGCCAAGGAAAGC
AGGGGCCTGACTCTTCTGACCAAGTTGTTACATCGACCTTGCAAAGGGTAGAGTGAAGATCTCGTCATGATCTCATATCATCGTGCAAATATGTGATTTC
ATTTTCCATATGCATCAGTGCTTCATTCTTAGAGTATAACGGCTATGTAATAGTTTTGTTCTCTCCAGATTCTGTAACACCACTCGTACGAAATTACTCA
CCAATGGCTAACATATAAGCCGTTTGATTCATATATATTATATGTGCCTTCAACTTTATTCAGCTTTAATCTTACAAGACCAGTAGTTCAGCCTAAAAAC
AGCAAAATAATCTAATTAATCCATCTATGTGCAGGCGGCGCGTCCCAACCTCTAGTCTCCTATTACCAATTGCAGCAGACTTGGACTAATGGAATTGCTT
GAAGTGAAGACCAGTGAACAAAAGGCTTTACACAAAAAGAATTGTTTGACCTCTTTCGGGATAAGGCCCGGAAGAAGCAGGGATTGAACCAGGGCTTGTT
GACACAGCAGATATCAAAAGCCTATGTTATCTCATTTTCAGGGACCGAGCAAGGGATGAGCGCCCTCTGATCTAACGACCAAACAAACAACTGCCCTTGT
TACTAGAAATATGAAGCGTGCTAGCGCGCACTTCCTATTAACCAATTCACCAATTTTAAGATTTGTAAACAAAGATAATAGGAGCCGAAGTCAATCCCTT
AAAACACTCCTCCCCGAGGGGACGTTATCGGTCGCTTCGTTCCCTTGTTTACTGATCTCTTTTCAGGAGATAGGTTTACCGTTGCAAACTCATCTGCTTG
TAAATTCATTGTGTAAAATAACTCGTAAATTCATTGTGCCAGAATTGATCACTGATCAGGTGTGATCAGTCTCATCCGTCTAAGAGACTGATCCGGTGCG
ATGAGTCTCATCCGTGTAATATTTTGGAATTCCTCTTCCAACTCGTCCCGGAATGGGCGTTATGGCAAAGAACAAGAAGAAAAAGAAAGAAGGAATTTGT
CCAATAGTAACAAATGGTGCCTCCACAGGTTGACATCCGATCCAACCTAGTAGTAAGCAATCCGCCAAAAGCAACCAAAATATTCCTTGGTGAATCGGTC
GAAAACTTGAACTACGCACATACATTTCTTTAAAAAAAGGTAAAGCCAAGAGATATAAAAACTGGTGCTATTGCGGCTACACCTGGAGCGAGCCCACAAG
AGCTTTTACTGTACCAGTTCCGAATATAAGAAGGGGCTCGCGGATTTTAACAGGTTAGGCTTAATCTACCCAATTGGAAATCTCTTGCAGTAGCTTTTAC
TAGAAATCCATTTCTCCCACAAAGCTCCTGTGACCTAACCATCTAGATAGAAGCCTCGCA