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Detailed information on CNT30551970


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673517Oryza brachyanthaSetaria viridis8.9833.7487.882forward
CNT30138306Oryza brachyanthaLolium perenne19.1728.1486.29175forward
CNT30597090Oryza brachyanthaOryza meridionalis23.2246.3992.45212forward

Expression of CNT30551970

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MISLGSCSLFPNVVMPISSPAFMSMRASFGFWLLLFGDSLVRDCVDDAKLLLSSFPLPHFLSFCIRLGLFPKKLYPLEELS

>peptide 2 (35 aa)
MLICSRSLRPCCFSHQKHLMSLIPEKLCPSWLHAS*

>peptide 3 (48 aa)
LQLKILTAKRNADLFSISPTMLLLTSETLDVVDPREVVSFMASRFMRL*

Sequence

>CNT30551970
CTTCAGTTGAAAATACTTACAGCTAAGAGGAATGCTGATCTGTTCTCGATCTCTCCGACCATGTTGCTTCTCACATCAGAAACACTTGATGTCGTTGATC
CCAGAGAAGTTGTGTCCTTCATGGCTTCACGCTTCATGAGACTTTGATAGAACTCTACAACCTCTGGAGCATGGTGTACCTTGTCACCACCAGCAAGGTT
TCTAGGTAGCGATCCAGGGGGTGGAGGTGGGCCACCGAGTTTCCCAGGAGGTACACCTGGTGGTGGAGGTACACCACTTGTGGTGTTGACAGCTCCTGAG
GCAGTGGCTGAGGGTGCAGGAGGTGGCCGAGGAACTCTTGGAGCTCTTTTCTCAATGTTTGCGAGTTTCGGTTGCGTCACCACTAGAGGGTTGTTCTGAT
TATCACTAGATTGGCCACTGGATTCAGCATTAGCTGTAGGAGCCTTCTCCTTTATTTGAGCAAGTTTTGGAGGGAGTGCAGCTTTTGGACCTGAGGTACT
AACACCACCATATCTTTGTACTCTAGCTTTCTCGGCCTTCTCTTTTATCGCCTTCTCCCGTTCTGTGGCGAGTTTGTGCCTATCTTTATAAGCTGGATAT
TTCTCATCAGCAAAACCTGCTACAGTCTTTGACATCAACTGGAATGAGGATGCAACATTTGCCTCACCCATGATATCACTTGGATCTTGTTCCCTCTTTC
CAAATGTTGTAATGCCCATATCATCTCCTGCATTTATGAGCATGAGAGCTTCCTTTGGTTTCTGGCTGTTACTCTTTGGGGACTCACTAGTAAGGGACTG
TGTCGATGATGCTAAACTGCTCCTGTCATCCTTCCCTCTTCCCCACTTCTTGAGCTTTTGCATCAGATTGGGCCTTTTTCCAAAGAAGCTGTATCCGCTG
GAAGAACTGTCAA