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Detailed information on CNT30551969


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 6e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555389Oryza brachyanthaOryza glaberrima50.5164.5187.97449forward
CNT3012274Oryza brachyanthaZea mays33.340.6680.74296forward
CNT3068379Oryza brachyanthaLeersia perrieri14.5121.1188.37129forward
CNT30353380Oryza brachyanthaEragrostis tef46.5771.8879.23414forward
CNT30367618Oryza brachyanthaSorghum bicolor28.1235.2182.4250forward
CNT30118065Oryza brachyanthaOryza nivara20.4740.3593.41182forward
CNT30604840Oryza brachyanthaOryza punctata7.9920.3495.7771forward

Expression of CNT30551969

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MISLGSCSLFPNVVMPISSPAFMSMRASFGFWLLLFGDSLVRDCVDDAKLLLSSFPLPHFLSFCIRLGLFPKKLYPLEELS

>peptide 2 (35 aa)
MLICSRSLRPCCFSHQKHLMSLIPEKLCPSWLHAS*

>peptide 3 (48 aa)
LQLKILTAKRNADLFSISPTMLLLTSETLDVVDPREVVSFMASRFMRL*

Sequence

>CNT30551969
CTTCAGTTGAAAATACTTACAGCTAAGAGGAATGCTGATCTGTTCTCGATCTCTCCGACCATGTTGCTTCTCACATCAGAAACACTTGATGTCGTTGATC
CCAGAGAAGTTGTGTCCTTCATGGCTTCACGCTTCATGAGACTTTGATAGAACTCTACAACCTCTGGAGCATGGTTTCTAGGTAGCGATCCAGGGGGTGG
AGGTGGGCCACCGAGTTTCCCAGGAGGTACACCTGGTGGTGGAGGTACACCACTTGTGGTGTTGACAGCTCCTGAGGCAGTGGCTGAGGGTGCAGGAGGT
GGCCGAGGAACTCTTGGAGCTCTTTTCTCAATGTTTGCGAGTTTCGGTTGCGTCACCACTAGAGGGTTGTTCTGATTATCACTAGATTGGCCACTGGATT
CAGCATTAGCTGTAGGAGCCTTCTCCTTTATTTGAGCAAGTTTTGGAGGGAGTGCAGCTTTTGGACCTGAGGTACTAACACCACCATATCTTTGTACTCT
AGCTTTCTCGGCCTTCTCTTTTATCGCCTTCTCCCGTTCTGTGGCGAGTTTGTGCCTATCTTTATAAGCTGGATATTTCTCATCAGCAAAACCTGCTACA
GTCTTTGACATCAACTGGAATGAGGATGCAACATTTGCCTCACCCATGATATCACTTGGATCTTGTTCCCTCTTTCCAAATGTTGTAATGCCCATATCAT
CTCCTGCATTTATGAGCATGAGAGCTTCCTTTGGTTTCTGGCTGTTACTCTTTGGGGACTCACTAGTAAGGGACTGTGTCGATGATGCTAAACTGCTCCT
GTCATCCTTCCCTCTTCCCCACTTCTTGAGCTTTTGCATCAGATTGGGCCTTTTTCCAAAGAAGCTGTATCCGCTGGAAGAACTGTCAA