« Back to Oryza brachyantha search


Detailed information on CNT30551956


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENA3|NDHI_ORYNI, E-value = 4e-106

BLAST vs NONCODE:
NONORUT005924, E-value = 1e-137

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202349Oryza brachyanthaPisum sativum18.231.8679.57460forward
CNT30220769Oryza brachyanthaHordeum vulgare21.3253.3788.87539forward
CNT30395374Oryza brachyanthaTriticum turgidum20.2948.4487.72513forward
CNT30589541Oryza brachyanthaMusa acuminata18.257.4385.43460forward
CNT30438367Oryza brachyanthaAegilops tauschii2.5326.4596.8864reverse complement
CNT30258499Oryza brachyanthaAvena sativa7.461.9294.12187forward
CNT30659065Oryza brachyanthaTriticum dicoccoides7.2832.896.74184forward
CNT3017910Oryza brachyanthaZea mays26.9428.2391.78681forward
CNT30624957Oryza brachyanthaDaucus carota12.8220.3890.43324forward
CNT30689544Oryza brachyanthaTriticum urartu56.1722.7391.271420forward
CNT30152193Oryza brachyanthaPrunus persica20.4111.8180.43516forward
CNT30434219Oryza brachyanthaPapaver somniferum10.0170.0886.56253forward
CNT30327547Oryza brachyanthaAsparagus officinalis21.7217.4284.52549forward
CNT30149637Oryza brachyanthaBrachypodium distachyon11.9998.0693.73303forward
CNT30585663Oryza brachyanthaEchinochloa crusgalli22.1591.9593.39560forward

Expression of CNT30551956

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MRPCSTIWFDLVVQRIPYHDVSGIVVISEKGIVIQTSEVNPSPIVQKFLSLDHSEPFTNITANMIKTFIAPT*

>peptide 2 (29 aa)
MRTRIEPIELIRIEQLHNKREKKVFVGSR*

>peptide 3 (84 aa)
NKIEPYCRLFQVLNKHGHLKNLLGRRICIAYNPHNLRFSAQKQFAWIYIHPKVSFLIHLMDKLVHIECILYMYHKFLRNVTLDL*

>peptide 4 (65 aa)
MEERMDNPIAASAAARAITKIAKMSPFNWRLSNRSENVTRFRLIEFSISSRHIRALTMFRLVIKP*

Sequence

>CNT30551956
AATAAGATAGAGCCATACTGCAGGTTGTTTCAGGTCCTAAATAAGCACGGACACTTAAAAAATCTGTTGGGCAGGCGGATTTGCATCGCTTACAACCCAC
ACAATCTTCGGTTCTCGGCGCAGAAGCAATTTGCTTGGATTTACATCCATCCCAAGGTATCATTTCTAATACATCTGATGGACAAGCTCGTACACATTGA
GTGCATCCTATACATGTATCATAAATTTTTACGGAATGTGACATTGGATCTATAAATTTCCCTTTTCAACATAAAAATTTTCGATCTGGTAAAAATGAAA
TTAGTACTATATCAATCAAATGTATTGTAGACACCAGACGAAGCAATGGTTTATCCAAACTTGAACAAATAATGCAATATATTTCTTAATCCGTTTGTGA
GAAAGCGTGAAAAGAGCCAAGACACTTGAATTTTGGGCTTCAACAATCATAATTATACGAATTGTATATACGAATTCGAATTTGCCAATAAATTGGCTAT
CGTCTTTTCCATATAAATTATTGCAATATTCAAATTGCAATATCAATGAATTGCAAAAATTCAACTAAGTAAAAAGGATACTATGGAATAACCTACTCAA
AAAAAGGATATTCTCAAATAATAATAAGAAAATAGTATTCATTTCTATTCATCTTAATATTTCATATTATTATTATATGTGTCCCTTTGTTTAGAAGATT
CTATGTCTAATTATTCAAAAAATTAGATTGATTGATACGAGTTGATTTCCTGTTACGGTGGATGGAAGAAAGAATGGATAATCCAATAGCTGCTTCAGCA
GCCGCAAGGGCTATAACAAAAATTGCGAAAATGTCTCCTTTTAATTGGCGACTATCAAATAGATCAGAAAATGTTACGAGATTTAGATTAATTGAATTCA
GTATAAGTTCAAGGCATATTAGAGCTCTAACCATGTTTCGGCTTGTGATCAAGCCATAGATACCAATCGAAAATAAATAGACACTCAAAAAAAGTACATG
CTCAAACATCATTAACTAACTCCTTATCAATCTCGATTCATTTCAATATGAGGACAAGAATTGAACCGATTGAATTAATTAGAATAGAACAATTACACAA
CAAAAGAGAAAAGAAGGTATTTGTTGGCAGTAGATAGGTTTTACTAAATCAAAATTGTGGTTCTTTAGTTATTTATTTTAGATTTGCAATTCTAAGAATT
TAGACTCATTCTAAGTATTTCTTATTGCCGAGCCATAGTAATTGCACCTATTAAAGAAACTAGAAGAATTATGGAAATGAGTTCAAATGGAAGATAAAAA
TCGGTTGCTAAATGAATCCCAATTTGTTGAACGTTATTTATGAGACCTTGTTCTACTATTTGGTTTGATCTTGTAGTCCAAAGAATTCCATACCACGACG
TATCTGGGATAGTAGTCATTAGTGAAAAAGGAATAGTTATACAAACGAGTGAAGTGAATCCATCTCCAATAGTCCAAAAATTCTTATCTTTAGACCATTC
TGAGCCATTTACGAACATTACGGCAAATATGATCAAGACATTTATAGCTCCCACATAAATAAGAAGTTGTGCCACAGCTACAAAGTAGGAATTCAATAAA
ATATAGAATAAGGATATACAAACAAGAACTAATCCTAGCGAAAAAGCAGAAAAAGTTGGGTTGGTAAGTAATACCACCCCTAGACCCCCTAGTAGAAGAA
CAAATCCCCCAAATAGCACAAGAATTTCATGTATTGGCCCAGGTAAATCCATTATGGATAAGAAGAAATTAATAGTATAAAATTTTTCATGAACTGACTA
AAACTAAAAGATTCAAGGAAGAAAAAGGGATTAGGATATTTTTTTGTATATTGTATATTAAGTTCTTTCTTTTTGTATATTGTATATAAGTTCTTTCTTT
TCTTTTTCTATAGTTAGAAATCACATCACGAAAATCTACTTTGATTTTAAATCAGGAATAATTTGCAATAAGCAGTAGGTATTCGTTTTTCTTTCTAGGC
AGTAGGTATTCGTTTTTCTTTCTAGTTAGTAAAGAACTTTTGGAATCTAACAAAAAAATTCTAGTAACTAGTAATCAGTAATCGTTCTTGAATTCCAAGA
TTTTTCTTCGTCTATTTTACTTTGAGTTGAATTCCTAATTGTTTGAATTGTGTAATCTCCCATTATGGAGATTGGTAACCGACTCAAAGCAATTTGATTG
TAATTCAATTCATGACGATCATAAGTAGAAAGTTCATATTCTTCAGTCATTGATAAACAGTTTGTCGGACAGTACTCAACACAATTACCACAAAATATAC
AAACTCCGAAATCAATACTATAATTAAGCAATTGTTTCCTTTTAATATCCTTTTCAAATCTCCAATCCACAAGGGGTAGATCTATAGGGCATACGCGAAC
ACATACTTCACAAGCAATACATTTATCAAATTCAAAGTGGATTCGCCCCCGGAAACGCTCCGATGTAATTGATTTTTCATAGGGGTAGTGAATCGTTATA
GGTAAACGATTTGTGTGGGATAAGGTAA