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Detailed information on CNT30551919


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673340Oryza brachyanthaSetaria viridis13.3561.989.9208forward
CNT30222283Oryza brachyanthaHordeum vulgare6.3523.5792.9399forward
CNT30564216Oryza brachyanthaActinidia chinensis5.3937.6790.4884forward
CNT3084712Oryza brachyanthaVigna radiata5.3929.6886.984forward
CNT30437582Oryza brachyanthaAegilops tauschii5.3925.4591.6784forward
CNT3014905Oryza brachyanthaZea mays13.8646.7591.2216forward
CNT30683149Oryza brachyanthaTriticum urartu6.3522.3592.9399forward
CNT30104607Oryza brachyanthaOryza rufipogon6.8729.8194.39107forward
CNT30115596Oryza brachyanthaOryza nivara8.5461.8686.47133forward

Expression of CNT30551919

Peptides detected in this lncRNA

>peptide 1 (53 aa)
YIHAASVLLLDLQYIISIYTKIKQALDWPPHEHMTHRSTHAFAAIGIQTKIKS*

>peptide 2 (30 aa)
YSCSLCTALRSAVYHLHLYKDQAGTRLATT*

>peptide 3 (64 aa)
MALIVKRGLLVSEAPGSPLGLDKLLFISWLAMGGAYAVAISAPLLQNTRKTHTDAKPNCLCLCLL

>peptide 4 (28 aa)
MQWPSLLPCCKTQEKHTRMQNQTASASAF

>peptide 5 (73 aa)
MKGSPLMGCTTWYVACVRYQTFRKCLISRNILRESVSTYQTFTKSVNFFSRKYDTYYSVPKKKENLWFSRFSV*

Sequence

>CNT30551919
TATATTCATGCAGCCTCTGTACTGCTCTTAGATCTGCAGTATATCATCTCCATTTATACAAAGATCAAGCAGGCACTCGATTGGCCACCACATGAACACA
TGACCCATCGATCTACACATGCATTTGCAGCCATCGGGATACAAACAAAGATCAAATCTTGATCGGTCGGCCTACTTGAAGTAGTAGGGGAGGTCGAGCA
CGTAGAGGAGGAAGTAGGCCCAGAGGGCGCCGGAGACGCCGCCGAAGAAGAAGCCGCCGGTGAACTGCGCCCAGCCGTTGGAGAGGTACCAGGCGACGAG
CGGGCTGGAGGTCACCGGCGTCTCCAGGCTTCCGATGAAGGGGTCGCCGTTGATGGGCTGCACCACCTGGTACGTTGCCTGCGTGCGGTACCAAACATTC
AGAAAGTGTCTGATATCAAGAAATATTTTACGAGAAAGTGTCTCGACATACCAAACTTTCACTAAATCGGTCAATTTTTTTAGTAGAAAATATGATACAT
ACTACTCTGTCCCAAAAAAAAAAGAGAATTTATGGTTTTCTAGATTTAGCGTTTAACCATTAGTCTTATTTAAAAAATTTATTAAAAATAAAAAAATAAT
CATATGTAAAGTCCTATTCATGTTTTATCATGGAGTAACAATAAAAATATTAATTATAAAATTTTTTAAATAAGACAAAGAGTTAAAAATTCTATCCAAA
AACTCAGAAATTCGTTTATTTTGGGACGGAGGTGGTAAGTTACTATTTCAATAACTTGAATAGCAATTTTCCATATTACATCTAAAAAATTGAGCAGCAA
TTTCACGTAATTACATTCAAAACTTGTGGATAGTGGGTCTTTTGACCTGGAGTGAAACTGTAAATCAGTAAAAACTTAGCTCCACCATATAGTTCATTTT
ATCTCTTATAAGCAGCTCCACTAAACTCACTCTAAAAAATAGAATTTATATTGTTTGGCACAGCGCCAGCTCAAAGAAATTTGGACTTAGGAGCTAGAGC
AGTGTTAAACGGGGCCTTAGATATATGTCATATTTTAATTCTCTCTATTACATATGACATATTGTATTTATCTACAAATAGCACATGCCAAGAACTACGA
GGTTAACTAAAAATGTATATGCCTATCAATATCTGAGGTTCACATTCAGTTTGGTCTAAAACATTTCTTCTTGGAATATGAAAGTGGTCATTTAATCGAG
GGAAAAAAAGGGGACAACGAAACGAACAGAAACATAAAAAGAACGCAACAAACCAAACAACATCTGAATTTACTTGATCATCACACACCATTGCTTGTGA
AAAAGAAAACATTCAACTTGTGATTGCTCCACACAGCTCACTCTACTAACCTTGTCCGGCTGGATGGCCTTGATCGTGAAGCGGGGCCTCCTCGTGAGCG
AGGCACCGGGCAGCCCCCTCGGCTTGGACAAGCTGCTCTTCATCAGCTGGCTCGCCATGGGAGGAGCGTATGCAGTGGCCATCTCTGCTCCCCTGCTGCA
AAACACAAGAAAAACACACACGGATGCAAAACCAAACTGCCTCTGCCTCTGCCTTCTT