« Back to Oryza brachyantha search


Detailed information on CNT30551913


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39172|AER_ARATH, E-value = 8e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697488Oryza brachyanthaOryza sativa22.5517.783.33108forward
CNT30597190Oryza brachyanthaOryza meridionalis34.2442.2779.88164forward
CNT30101185Oryza brachyanthaOryza rufipogon23.1717.782.88111forward

Expression of CNT30551913

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MCDSDKLFANIMTGEELEKRRWRRINPLNNVLHISHLPFL*

>peptide 2 (71 aa)
MAPNQSPQQCPPHKSPSVPLGIRPSPSQTGSTYHSSCTARSSRMPQSGHPVACWATRHLASCHQHSRSRCRS

Sequence

>CNT30551913
TTAAGTGGCATGAAAGGAATAAAGTAAAATTCAGAAATACATAAGGGATTGAACAAAGCTATGTAGGGAATTTTCTCTCTGTATATAATGGTCCAAATTG
TGGCACACCTTAGGTGGTGGTTAGGGTTTTCTAGGGTTGACGCCCCTAAACATGCATACTAAAAGTGGACGCCCAAACCAAGTAGTGCGGTGCATTACTC
ATGTGCGATAGTGACAAGTTGTTTGCCAACATTATGACCGGTGAAGAGCTTGAGAAGCGCCGATGGCGCCGAATCAATCCCCTCAACAATGTCCTCCACA
TAAGTCACCTTCCGTTCCTTTAGGTATTCGGCCATCTCCTTCTCAAACCGGTAGTACATATCATAGTAGTTGTACTGCGAGATCATCCCGCATGCCGCAA
TCCGGCCACCCAGTCGCATGTTGGGCAACACGGCATCTAGCGTCTTGCCACCAACATTCTCGAAGTAGATGTCGATCCC