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Detailed information on CNT30551896


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 5e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673014Oryza brachyanthaSetaria viridis48.7258.392.88323forward
CNT30520920Oryza brachyanthaSetaria italica49.7747.6292.73330forward
CNT3042792Oryza brachyanthaPrunus dulcis20.5136.8680.88136forward
CNT30182270Oryza brachyanthaSecale cereale23.5328.2691.67156forward
CNT30292897Oryza brachyanthaTriticum aestivum50.8357.2289.91337forward
CNT30222663Oryza brachyanthaHordeum vulgare22.6229.6491.33150forward
CNT30390300Oryza brachyanthaTriticum turgidum64.7155.2887.18429forward
CNT30438727Oryza brachyanthaAegilops tauschii34.3972.1592.54228forward
CNT30249726Oryza brachyanthaAvena sativa50.9842.1486.98338forward
CNT30662078Oryza brachyanthaTriticum dicoccoides29.4167.2490.26195forward
CNT30454500Oryza brachyanthaSaccharum spontaneum25.7947.2490.64171forward
CNT30135064Oryza brachyanthaLolium perenne42.3849.2190.75281forward
CNT3014188Oryza brachyanthaZea mays48.8742.4191.67324forward
CNT30720963Oryza brachyanthaTriticum spelta47.3656.3789.81314forward
CNT30344813Oryza brachyanthaEragrostis tef40.4251.2493.28268forward
CNT30578384Oryza brachyanthaOryza barthii21.5736.4895.8143forward
CNT30582394Oryza brachyanthaEchinochloa crusgalli25.7945.8491.81171forward
CNT30604850Oryza brachyanthaOryza punctata23.3815.9696.13155forward
CNT30556995Oryza brachyanthaPanicum hallii33.1831.2992.27220forward

Expression of CNT30551896

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MVRQTLRMETRPMAPRAPAWPCTGVLRSGPVSAKGPRRRYPWARHRAAPSAWTSCSSSAGSPWEERMQWPSLLPCCKTQEKHTRMQNQTASASAF

>peptide 2 (53 aa)
YIHAASVLLLDLQYIISIYTKIKQALDWPPHEHMTHRSTHAFAAIGIQTKIKS*

>peptide 3 (33 aa)
MGGAYAVAISAPLLQNTRKTHTDAKPNCLCLCLL

>peptide 4 (30 aa)
YSCSLCTALRSAVYHLHLYKDQAGTRLATT*

Sequence

>CNT30551896
TATATTCATGCAGCCTCTGTACTGCTCTTAGATCTGCAGTATATCATCTCCATTTATACAAAGATCAAGCAGGCACTCGATTGGCCACCACATGAACACA
TGACCCATCGATCTACACATGCATTTGCAGCCATCGGGATACAAACAAAGATCAAATCTTGATCGGTCGGCCTACTTGAAGTAGTAGGGGAGGTCGAGCA
CGTAGAGGAGGAAGTAGGCCCAGAGGGCGCCGGAGACGCCGCCGAAGAAGAAGCCGCCGGTGAACTGCGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGC
CTCCTTCTGGCGGCCGGTGAGCGTGAGCGTCGGCGCCGTGGACGGCTCGCCCTCGCCGAAGGAGGCGACGCCGTACATGGTGAGGCAGACGCTGAGGATG
GAGACGAGGCCGATGGCGCCGAGGGCGCCGGCCTGGCCGTGCACCGGCGTGTTGCGGAGCGGGCCGGTGAGCGCGAAGGGGCCGAGGAGGAGGTACCCGT
GGGCGAGGCACCGGGCAGCCCCCTCGGCTTGGACAAGCTGCTCTTCATCAGCTGGCTCGCCATGGGAGGAGCGTATGCAGTGGCCATCTCTGCTCCCCTG
CTGCAAAACACAAGAAAAACACACACGGATGCAAAACCAAACTGCCTCTGCCTCTGCCTTCTT