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Detailed information on CNT30551876


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 8e-84

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672821Oryza brachyanthaSetaria viridis33.4937.9484.38288forward
CNT30521106Oryza brachyanthaSetaria italica33.4939.7284.38288forward
CNT30180865Oryza brachyanthaSecale cereale41.1650.0785.31354forward
CNT30287468Oryza brachyanthaTriticum aestivum39.378.2486.69338forward
CNT30221752Oryza brachyanthaHordeum vulgare41.0552.7786.12353forward
CNT30386515Oryza brachyanthaTriticum turgidum41.0525.5185.55353forward
CNT30555612Oryza brachyanthaOryza glaberrima41.2833.9794.65355forward
CNT30436411Oryza brachyanthaAegilops tauschii41.0553.5786.69353forward
CNT30252135Oryza brachyanthaAvena sativa40.3539.8986.74347forward
CNT30658347Oryza brachyanthaTriticum dicoccoides39.362.5986.98338forward
CNT30136970Oryza brachyanthaLolium perenne40.3554.385.59347forward
CNT304238Oryza brachyanthaZea mays39.352.1684.32338forward
CNT30648517Oryza brachyanthaRosa chinensis24.6541.5785.85212forward
CNT30681645Oryza brachyanthaTriticum urartu41.0524.1386.4353forward
CNT30721860Oryza brachyanthaTriticum spelta40.5860.885.67349forward
CNT30351770Oryza brachyanthaEragrostis tef39.1934.5387.54337forward
CNT30365555Oryza brachyanthaSorghum bicolor33.1458.5283.16285forward
CNT30597241Oryza brachyanthaOryza meridionalis34.7734.3393.98299forward
CNT30371468Oryza brachyanthaOryza glumipatula28.1421.0395.04242forward
CNT30150944Oryza brachyanthaBrachypodium distachyon39.8851.3588.63343forward
CNT30104669Oryza brachyanthaOryza rufipogon41.2842.8293.8355forward
CNT30578612Oryza brachyanthaOryza barthii34.7726.4495.65299forward
CNT30118025Oryza brachyanthaOryza nivara33.8425.1594.5291forward
CNT30604884Oryza brachyanthaOryza punctata27.4434.688.98236forward
CNT30556975Oryza brachyanthaPanicum hallii38.3741.385.76330forward

Expression of CNT30551876

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLMHCTCLTLSKPMMRTKASGYAFLASSSSLSTWVASLHPNMGSFHMVQYLPS*

Sequence

>CNT30551876
TACGAAAAACGAGCTGATAGTTATGGTAATTAACTTGGCCGTATCTTGGTGATACACGTATAATCAAAATAGATGAAATGCTGAGCAATTACGTGCTAGG
ATAATAAACAAATACCAGCAATTAACAAAACCAGAATTTCATTGTCGACGGATTCGGACATGCTCTAGGCATCATATTACATATATGTCGTAGATATATA
GCCGGAGAGCTTGCACTCACACCTCCTCACCCAACGTTATAGCTAGTTGTTGTACTCTTGTAATAACAGGTTGGGGGAACGAGAGATTACGTACATCAAT
ACAGCTTAATTAACACATGGAACATTTAAAAACAAAGAAAGAAAAGAAGGCGTAGAAAACCAACATGACCCAAAACCAAACATTACACAGTGACCGGTCG
ATTAGTCGGAGCCCGGGGGCTTGTAGGCGATGAAGCTGATGCACTGCACCTGCCTGACGTTGTCGAAGCCGATGATGCGCACGAAGGCGTCAGGGTACGC
CTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCGCTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCGTCGTAGTACCCG
GGGGACCTGTGGTTCTCGCGGTAGACGAAGCCGACCTTGCTGAACTCGAGGCACGGCACCCACTTGGACCGCAGCAGGTACTCGATCTGCTTCAGGAGGT
CCTCCACGCTCAGCGGCGGCAGGTACGACAGGGTCTCGAACTTCTTGATGCCCTCGATCGGCCATGACGGAGGGGGCCATCGTTCGTTAGGCGCTGAGTG
CTGCTTCTAGCTAGCTATCCTTGTGAACTGATGCCCTCTGCCTGCCGCTCACTGCACAGG