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Detailed information on CNT30551854


BLAST search results

BLAST vs Swiss-Prot:
sp|O65107|PSAN_MAIZE, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697529Oryza brachyanthaOryza sativa13.4823.0697.8995forward
CNT30676742Oryza brachyanthaSetaria viridis25.6725.0790.06181forward
CNT30523702Oryza brachyanthaSetaria italica14.892192.38105forward
CNT30658022Oryza brachyanthaTriticum dicoccoides8.2321.4889.6658forward
CNT30137831Oryza brachyanthaLolium perenne13.1921.5888.1793forward
CNT305897Oryza brachyanthaZea mays25.5338.7187.78180forward
CNT30680368Oryza brachyanthaTriticum urartu8.2322.0589.6658forward
CNT30349482Oryza brachyanthaEragrostis tef9.9329.5492.8670forward
CNT30367427Oryza brachyanthaSorghum bicolor17.7331.5787.2125forward
CNT30582696Oryza brachyanthaEchinochloa crusgalli25.3934.2990.5179forward

Expression of CNT30551854

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MRTRSPFPEDIGSALVLLLPLALDLQVVAGEVVGELAAAELDCVRPREVGAARRQPLLVVQLLHAHAITLAVSALAS*

>peptide 2 (67 aa)
MTPALAWEAAVCGTAAAGLSPTTLLFTPAMAAATCSREWVRIGWLGGGDDDDEESVVRCGDGFVCDRK

>peptide 3 (36 aa)
MIDRADDENEITISRRHWIRTCTSPSPRTRSPGRRR*

>peptide 4 (50 aa)
RQSSLLQIRTQMIQIQWTRTTSVLQFDLSSQIKVLGTVQAGRMLPAMAGQ*

>peptide 5 (31 aa)
TIKFATNSHSDDTNTVDTYDECSSVRSVITN*

Sequence

>CNT30551854
AGACAATCAAGTTTGCTACAAATTCGCACTCAGATGATACAAATACAGTGGACACGTACGACGAGTGTTCTTCAGTTCGATCTGTCATCACAAATTAAGG
TTCTAGGTACAGTACAGGCAGGCCGCATGTTGCCTGCCATGGCTGGCCAATGATCGATCGTGCTGACGATGAGAACGAGATCACCATTTCCAGAAGACAT
TGGATCCGCACTTGTACTTCTCCTTCCCCTCGCACTCGATCTCCAGGTCGTCGCCGGTGAAGTTGTAGGGGAACTGGCAGCTGCCGAACTCGACTGTGTA
CGCCCGCGCGAAGTTGGCGCCGCTCGTCGCCAGCCTCTTCTTGTCGTTCAGCTCCTGCACGCGCATGCAATCACCCTCGCCGTCAGCGCTCTAGCTAGCT
AGTTACCTTCTAGCTCGCTCGATCGACGACGATGGAAAGGAGAAGGGACGGACGGATGGATCAACCTTGTTGGCCTTGCTCTTCTCGAGGTACTCGTCGA
TGACGCCGGCCCTGGCCTGGGAGGCGGCCGTCTGCGGCACCGCCGCGGCCGGCTTGAGCCCGACGACGCTGCTGTTCACTCCGGCCATGGCTGCTGCTAC
GTGCTCGCGTGAGTGGGTTCGGATTGGATGGCTGGGCGGCGGCGACGACGACGACGAGGAGAGCGTGGTGCGGTGCGGTGATGGTTTTGTGTGTGACAGA
AAGCG