Detailed information on CNT30551818


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001056, E-value = 2e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596657Oryza brachyanthaOryza meridionalis29.1623.4487.5128reverse complement
CNT30370899Oryza brachyanthaOryza glumipatula50.1194.4286.82220reverse complement
CNT30110252Oryza brachyanthaOryza longistaminata53.0882.0486.7233reverse complement

Expression of CNT30551818

Peptides detected in this lncRNA

>peptide 1 (50 aa)
YSIICTSTSRRRRPKAHPSDSIQSAIPNYLKRSKPVTLVPRNATSLTLSS*

>peptide 2 (37 aa)
TPSYAHQPVEGGDQKHTPVTRSKALSPIISSDQNPLR*

Sequence

>CNT30551818
CTACTCCATCATATGCACATCAACCAGTCGAAGGAGGCGACCAAAAGCACACCCCAGTGACTCGATCCAAAGCGCTATCCCCAATTATCTCAAGCGATCA
AAACCCGTTACGCTAGTCCCCAGGAATGCGACTAGCCTCACACTTTCATCGTAAGCAACTAATAGTCATAACAGTACCATACATACATGGATAATAAGTG
GCAAGGTACATGACACAGCATAGGGTTCGAGGTCCCAACATACAACACATAAATAACAACGAAAGTCTCAAATAAAGCTCATAAGTATAAAACAAAAACC
GGTGGTGCCACAACCCCACAAGGGCAAACCAACCGGGCAAGAACCAAGCTGCAAGAGAAGGGATCACTCATTGCCCTCGCCATCCCCGGTAGAACAGTGA
CCACACAAGAAGCACAACTCACACCCGGAATCCTGACCT