« Back to Oryza brachyantha search


Detailed information on CNT30551809


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006839, E-value = 3e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554571Oryza brachyanthaOryza glaberrima31.7714.485.62299forward
CNT30596734Oryza brachyanthaOryza meridionalis32.4143.1488.2305forward
CNT30103863Oryza brachyanthaOryza rufipogon43.4647.2883.86409forward
CNT30574763Oryza brachyanthaOryza barthii43.0444.9582.72405forward
CNT30115939Oryza brachyanthaOryza nivara25.2937.689.5238forward

Expression of CNT30551809

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MCCMLGPRTLCCVMYLATYYPCMYGTVMTISCLR*

>peptide 2 (34 aa)
MARAMSDPFSCSLVLARLVCPCGVVAPPVFVLYL*

>peptide 3 (86 aa)
FFSKPLSSAFILRTPLQHKQTIERLHFSPPSSLFFSAGHQRKKLIAGRHVTQASSVPDVPGRDTGSCCSCWFIFLPDVTLPRISPS*

Sequence

>CNT30551809
CCTTCTTCTCTAAGCCACTGAGCTCAGCCTTCATCCTCCGCACTCCACTCCAGCACAAGCAAACCATAGAGAGACTCCATTTTTCGCCCCCAAGCTCCCT
CTTCTTCTCTGCCGGTCACCAGAGAAAGAAGCTCATCGCCGGCCGTCACGTCACCCAAGCTTCCAGCGTTCCTGACGTTCCAGGCCGAGATACAGGGTCG
TGCTGCTCGTGCTGGTTCATCTTCCTCCCAGATGTAACACTACCAAGAATCAGCCCAAGCTGAGCTCCAGGTGTGGAGAACGCTCGTCTTCTACCTCAGC
CTCGTTCTAGACCCGTTGGCTTTGTTCCTGCCTGTCCGATCTAGGCGTTCTTGGGTCGCCACTGCGTTCGTTGTGTTGCCAGGCACCTCCAACATCGACG
CTGCTTTCTGGACCTCTCTAACTCCTTTCAGCTGCACGATTCGGAGATCCCGGAGTGTGACGAACCTATTTCAGACGTTGAGAGTGATCTCCTACAGCAT
CAAGGTCAGGATTCCGGGTGTGAGTTGTGCTTCTTGTGTGGTCACTGTTCTACCGGGGATGGCGAGGGCAATGAGTGATCCCTTCTCTTGCAGCTTGGTT
CTTGCCCGGTTGGTTTGCCCTTGTGGGGTTGTGGCACCACCGGTTTTTGTTTTATACTTATGAGCTTTATTTGAGACTTTCGTTGTTATTTATGTGTTGT
ATGTTGGGACCTCGAACCCTATGCTGTGTCATGTACCTTGCCACTTATTATCCATGTATGTATGGTACTGTTATGACTATTAGTTGCTTACGATGAAAGT
GTGAGGCTAGTCGCATTCCTGGGGACTAGCGTAACGGGTTTTGATCGCTTGAGATAATTGGGGATAGCGCTTTGGATCGAGTCACTGGGGTGTGCTTTTG
GTCGCCTCCTTCGACTGGTTGATGTGCATATGATGGAGTAG