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Detailed information on CNT30551796


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 7e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697306Oryza brachyanthaOryza sativa39.9720.3993.61313forward
CNT30677073Oryza brachyanthaSetaria viridis24.7812.8691.75194forward
CNT30523788Oryza brachyanthaSetaria italica21.7116.1881.76170forward
CNT30640852Oryza brachyanthaNymphaea colorata14.0531.784.55110forward
CNT30273043Oryza brachyanthaChenopodium quinoa30.529.5882.85239forward
CNT30381337Oryza brachyanthaManihot esculenta24.3915.7681.68191forward
CNT30586190Oryza brachyanthaMusa acuminata11.1133.7287.3687forward
CNT30261311Oryza brachyanthaBrassica rapa23.2447.7782.97182forward
CNT3017878Oryza brachyanthaZea mays22.3525.3384175forward
CNT30683741Oryza brachyanthaTriticum urartu19.9236.0389.74156forward
CNT30477141Oryza brachyanthaArabidopsis halleri14.0540.4485.45110forward
CNT30365623Oryza brachyanthaSorghum bicolor29.1220.4392.54228forward
CNT30597034Oryza brachyanthaOryza meridionalis7.6625.869060forward
CNT30104230Oryza brachyanthaOryza rufipogon39.9712.7193.29313forward
CNT30117954Oryza brachyanthaOryza nivara22.6112.7992.09177forward
CNT30557185Oryza brachyanthaPanicum hallii22.3527.5282.29175forward

Expression of CNT30551796

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRCTSTDNHGDCHRLGSGSLTGGTPFRLLGKER*

>peptide 2 (43 aa)
MARIPLPGDAMHQHGQPWRLSQAWERQPDGWHPIQTSWEGKMT*

>peptide 3 (66 aa)
MHSKDHESVWSELHTLSTLIPGTIFCSVRMSTIFLPSTVDWYRVSSKRIAPEMYCPRPGAVTRRVR*

>peptide 4 (32 aa)
NLECCSSNRYKSESISFGLIQSCIFYCLNSEI*

Sequence

>CNT30551796
CAAATTTAGAATGTTGTTCTTCTAATAGATATAAATCTGAAAGTATCTCGTTTGGTTTGATTCAAAGTTGCATTTTTTATTGCCTCAATTCTGAAATCTG
ATTGAGCAACTAGTTAACTGTCTACTTTGAAGTCTTGGCCCACAATGATTTACTCCAGAAATAGTCACAGCACAGCACTAATACATTTGATTTTATATTA
GCTTTTAATAAGTTTGATACTTTGAATGCACAGCAAGGATCATGAGTCAGTCTGGAGTGAACTGCATACCTTGTCGACCTTGATACCTGGAACAATTTTC
TGCTCAGTTAGGATGTCAACAATCTTCTTGCCATCAACAGTTGACTGGTACAGAGTCTCCTCAAAGAGGATAGCACCGGAGATGTACTGTCCCAGGCCAG
GTGCAGTGACAAGGAGGGTCCGGTAAGCCTGGCGGTTGGCCTCAGTGTTCTCAAGGCCAATTGAGGCAAGCCTCTTGCCGCAGGTCGCGTTCGACTCATC
CATGGCGAGGATACCCCTTCCTGGTGATGCGATGCACCAGCACGGACAACCATGGAGACTGTCACAGGCTTGGGAGCGGCAGCCTGACGGGTGGCACCCC
ATTCAGACTTCTTGGGAAGGAAAGATGACTTGAGGAGAGTAGCAGACGCCATTGCTTGCTCCTGGTTTCCTGAAGGCAAAGGAGATCAGGTGCTGCCCGC
TCTTTGACACAGCTTTGCTTGCAGTCTTTCCTTAGAGGGGGGGTGAGAAGTGCAGCAACTTCTCAAATTTAAGGGCCTGCACC