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Detailed information on CNT30551757


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697159Oryza brachyanthaOryza sativa46.4949.1295.68139forward
CNT30677027Oryza brachyanthaSetaria viridis27.7628.4285.5483forward
CNT30297575Oryza brachyanthaTriticum aestivum24.4131.694.5273forward
CNT307240Oryza brachyanthaZea mays20.0714.9388.3360forward
CNT30721254Oryza brachyanthaTriticum spelta24.4113.1194.5273forward
CNT30344884Oryza brachyanthaEragrostis tef18.7324.3591.0756forward
CNT30117797Oryza brachyanthaOryza nivara28.0912.7396.4384forward

Expression of CNT30551757

Peptides detected in this lncRNA

>peptide 1 (98 aa)
TKTRKGKILPLAKILIFLSCKSFLQCNIGHQIPAISLTIPLGEFITDVWARGGAGEVEPGAEHLGRGERRHRLGPTIQRWRGSKEGGAVLSSEEGGESV

>peptide 2 (52 aa)
MSGLEEEPAKLSRVPSILVGASAAIASGPQFRGGEAARRGVLCSAQKKGGRV*

>peptide 3 (32 aa)
MQYRPSDSSNFTHHTTWRVHHRCLGSRRSRRS*

Sequence

>CNT30551757
CACAAAAACAAGAAAGGGGAAAATTTTACCACTTGCCAAGATTCTGATTTTTCTTTCATGTAAATCTTTCTTGCAATGCAATATCGGCCATCAGATTCCA
GCAATTTCACTCACCATACCACTTGGCGAGTTCATCACCGATGTCTGGGCTCGAGGAGGAGCCGGCGAAGTTGAGCCGGGTGCCGAGCATCTTGGTCGGG
GCGAGCGCCGCCATCGCCTCGGGCCCACAATTCAGAGGTGGAGAGGCAGCAAGGAGGGGGGTGCTGTGCTCAGCTCAGAAGAAGGGGGGGAGAGTGTGA