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Detailed information on CNT3055166


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548768Amborella trichopodaIpomoea triloba30.3766.3188.21246forward
CNT30380492Amborella trichopodaManihot esculenta30.4933.7483.81247forward
CNT30525058Amborella trichopodaPhaseolus vulgaris37.2858.5385.76302forward
CNT30504488Amborella trichopodaNicotiana attenuata35.860.1786.55290forward
CNT30709679Amborella trichopodaGlycine max32.9631.387.27267forward
CNT30610069Amborella trichopodaGossypium raimondii33.3361.2285.93270forward
CNT30176337Amborella trichopodaVigna angularis31.4825.1586.67255forward

Expression of CNT3055166

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MASRPFLISLTFSSAKASGSSARPKGSKLPPG*

>peptide 2 (70 aa)
YPKSRLNIRSSQESSKFTSLIGMFKNKKIKMQDHHYTTHTTPSLSQTLITKRHQKQERKEESLSGHKLVA*

>peptide 3 (37 aa)
MLTLPSPRTPIPNSDWVLAGTALPANAGEERAIVAMS*

Sequence

>CNT3055166
ATTACCCAAAATCTAGGTTAAATATTAGAAGCTCTCAAGAATCCTCCAAATTTACATCATTAATTGGAATGTTCAAAAATAAAAAAATAAAAATGCAAGA
CCATCACTACACAACCCACACAACTCCATCGCTCTCACAAACCCTTATCACAAAACGACACCAAAAACAAGAAAGGAAAGAAGAATCACTTTCCGGGCAC
AAATTGGTGGCATAGGCCCAAGCGTTGTTGTTCACTGGGTCTGCAAGGTGGTCAGCCAGGTTCTCCAATGGACCCTTTCCAGTGACAATGGCCTGAACAA
AGAACCCGAACATCGAGAACATGGCAAGCCGGCCGTTCTTGATCTCCTTGACCTTCAGCTCGGCAAAGGCCTCAGGGTCCTCAGCCAGGCCCAAGGGATC
GAAGCTGCCACCGGGGTAGAGTGGGTCAGTCACCTCACCCAGGGGACCACCGGCCACACGGTAGCCCTCGACCGCGCCCATGAGGACCACTTGACAGGCC
CGCAGTATCCCACCCGTAGTCACCGGGGAACTCCCCAGTAAGGTATGACGGGGGCTCCCCGGAGAACGGGCCGAGGTACTTGACTCTGTCGCGGCCGTAC
CATGGGCTTCCAGACACCGGGGCCCTGCTAGTACTCTTCCTCATGCTCACTCTTCCGTCGCCACGAACACCGATTCCGAATTCAGATTGGGTGCTGGCAG
GCACCGCCTTGCCGGCGAATGCTGGGGAGGAGAGAGCCATCGTTGCCATGTCGTAGCCTTAACGTTGCTTAGAGAAAGGGGTTGGGTTGGGCTGTGCTGT
GCTGTGTATA