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Detailed information on CNT30551654


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101060Oryza brachyanthaOryza rufipogon20.745.6895.5267forward
CNT30575105Oryza brachyanthaOryza barthii20.744.1795.5267forward
CNT30117067Oryza brachyanthaOryza nivara20.7413.9394.0367reverse complement

Expression of CNT30551654

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MDGQSWCNESLCCFRIHQGTRGDCPTWCKGGVKPKVRCDCLGRVR*

>peptide 2 (32 aa)
MVSVLRYRGDTLGHGNMLGSHVLWVKLYTSAE*

>peptide 3 (36 aa)
EHDEVWTGNRGVTKASAASGFIKAQEGTARLGVKEG*

Sequence

>CNT30551654
TGAGCATGATGAAGTATGGACGGGCAATCGTGGTGTAACGAAAGCCTCTGCTGCTTCCGGATTCATCAAGGCACAAGAGGGGACTGCCCGACTTGGTGTA
AAGGAGGGGTGAAACCTAAAGTGCGGTGCGATTGTCTAGGGAGGGTTAGGTGAAAGGTCTTATCATGGTTTCCGTACTGAGGTATCGTGGTGATACGTTG
GGGCATGGTAACATGCTTGGGAGCCATGTCTTGTGGGTAAAGTTGTACACCTCTGCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTGTTGGGCGA
ACTGACAGATTCATTGGGATTAG