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Detailed information on CNT3055147


BLAST search results

BLAST vs Swiss-Prot:
sp|P31155|METK1_PETCR, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522677Amborella trichopodaSetaria italica29.4432.1382.81285forward
CNT30381458Amborella trichopodaManihot esculenta29.9641.3182.07290forward
CNT30495282Amborella trichopodaOlea europaea20.3511.1981.73197forward
CNT30708643Amborella trichopodaGlycine max28.149.0181.99272forward
CNT3096210Amborella trichopodaSolanum tuberosum13.8421.5481.34134forward
CNT30508528Amborella trichopodaSolanum lycopersicum15.3928.7182.55149forward
CNT30174161Amborella trichopodaTrifolium pratense18.4922.6983.24179forward
CNT30144438Amborella trichopodaMedicago truncatula16.6332.9283.23161forward
CNT30310308Amborella trichopodaCamelina sativa14.1559.3182.48137forward
CNT3017355Amborella trichopodaZea mays14.2624.9182.61138forward
CNT30218668Amborella trichopodaKalanchoe fedtschenkoi14.7736.9581.82143forward
CNT30363315Amborella trichopodaSorghum bicolor29.9634.9483.45290forward
CNT30331991Amborella trichopodaDioscorea rotundata12.9126.4386.4125forward
CNT30148817Amborella trichopodaBrachypodium distachyon2218.4384.51213forward
CNT30574675Amborella trichopodaOryza barthii16.3235.0380.38158forward

Expression of CNT3055147

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTMLVLVQVSQATLESGSCSRQASRTASEIWSQSLSGCPSFTDSDVKR

>peptide 2 (74 aa)
TPFLEVQVKNNYTNIINKLLAYELPSDAAALKSHQGFIDGVDHREIPSQRITVFRFQIPVHKYFMLPTLKNKNS*

>peptide 3 (82 aa)
MGTPTTIGVNNDLAAGVADDFLIVNIALCGDFTKDHDHVGLGAGLAGDLGIRVLLKAGIEDSIRDLVAEFVRVPLVHRFGCKE

>peptide 4 (52 aa)
MRPAQCTYEPNLKPQHSWQPGEQCRPRSYQPWWGPCLRRHPLHGHPNHHRCQ*

>peptide 5 (62 aa)
MGLIIEKFRVKELQSFASKYQSTNTLCSQPLKTKTANKPPKEGNQKKKKRTTIIHTNTYNNQ*

>peptide 6 (74 aa)
MKISCFNYAVVVAAGCSLKEPPITSSLEVEVDSNHSRPEVEVLLHNLQYILIRDQASSIGVHKNGEWLGDTNGV*

Sequence

>CNT3055147
AACGCCTTTCCTAGAAGTTCAAGTGAAAAATAATTACACAAACATCATCAATAAATTGCTTGCGTACGAGTTACCAAGTGACGCTGCTGCCTTGAAAAGT
CACCAAGGTTTTATAGATGGGGTTGATCATAGAGAAATTCCGAGTCAAAGAATTACAGTCTTTCGCTTCCAAATACCAGTCCACAAATACTTTATGCTCC
CAACCCTTAAAAACAAAAACAGCTAATAAACCACCAAAGGAAGGCAACCAAAAAAAAAAAAAAAGAACCACCATAATTCATACAAACACTTATAACAACC
AGTAGAAATAATAGTAGAATTCGGCATCTTATTGGCCGTCAGCTCGGAACATAAAGGGTCGAATCGATGGATGAAGATCTCATGTTTCAATTATGCGGTG
GTTGTAGCGGCTGGCTGCAGTCTTAAGGAACCTCCCATTACCTCCTCTCTTGAGGTCGAGGTCGATAGCAATCATTCCAGGCCTGAAGTCGAAGTTCTCC
TTCACAATCTTCAATATATCCTTATCAGGGATCAGGCCAGTTCCATAGGTGTCCACAAAAACGGAGAGTGGCTCGGGGACACCAATGGCGTATGAGACCT
GCACAATGCACCTACGAGCCAAACCTGAAGCCACAACACTCTTGGCAGCCTGGCGAACAATGTAGGCCCCGCTCCTATCAACCTTGGTGGGGTCCTTGCC
TGAGAAGGCACCCCCTCCATGGGCACCCCAACCACCATAGGTGTCAATAATGATCTTGCGGCCGGTGTCGCGGACGATTTTCTCATAGTCAATATTGCCC
TTTGTGGTGATTTCACCAAAGACCATGACCATGTTGGTCTTGGTGCAGGTCTCGCAGGCGACCTTGGAATCAGGGTCCTGCTCAAGGCAGGCATCGAGGA
CAGCATCAGAGATTTGGTCGCAGAGTTTGTCAGGGTGCCCCTCGTTCACAGATTCGGATGTAAAGAGG