Detailed information on CNT30551432


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000629, E-value = 2e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690998Oryza brachyanthaOryza sativa8.7930.0790.86175forward
CNT30555837Oryza brachyanthaOryza glaberrima10.8936.5981.57217forward
CNT30595624Oryza brachyanthaOryza meridionalis11.5531.3487.83230reverse complement
CNT30109401Oryza brachyanthaOryza longistaminata8.8921.4887.01177forward
CNT30100709Oryza brachyanthaOryza rufipogon8.8448.8986.36176forward
CNT30575187Oryza brachyanthaOryza barthii11.946.1187.76237forward
CNT30604733Oryza brachyanthaOryza punctata11.4568.0687.28228forward

Expression of CNT30551432

Peptides detected in this lncRNA

>peptide 1 (55 aa)
SCSLLNPFLSSFCLLKFGLHSSASPQNHQLRPSFSTEMIPADLLPCWHHSSSSAP*

>peptide 2 (55 aa)
MGWHLDLQGAAHELRTVLQLQVRIMMLIQLELRKRFTCVVVRSFHLQFQMSKIVH*

>peptide 3 (61 aa)
MNKLMVYELNVFVIFDRAVRPHVYGRSDRRYLGGQTGRLAPKVSAFGFLFGFGFVLREFDF*

>peptide 4 (30 aa)
MVSLFDSCVGDLMPRESVAGDRSGVNLEIS*

>peptide 5 (36 aa)
MKSHDSPSSPPPIHLLNPNFVIPSSCTKFVRVCLRS*

>peptide 6 (29 aa)
MFLLFLTGRSDRTYMGGQTVGIWAVRPAG*

>peptide 7 (43 aa)
MSIEERSWMYNGWNNNGCHSHEWDGTWTSKAQHMNFEQYCSYK*

>peptide 8 (37 aa)
PALSSTHFSPPFASSSLVSTLVHHHRTINSGQASPLR*

>peptide 9 (51 aa)
MPPESFLCRLREKLGFRLYFDSRSKVLVRSVFYALCKHWLINKSREIQSTS*

Sequence

>CNT30551432
GTCCTGCTCTCTCCTCAACCCATTTCTCTCCTCCTTTTGCCTCCTCAAGTTTGGTCTCCACTCTAGTGCATCACCACAGAACCATCAACTCCGGCCAAGC
TTCTCCACTGAGATGATTCCAGCCGACCTCCTCCCTTGCTGGCATCACTCCTCTTCCTCAGCCCCATGAAGTCTCACGATTCCCCCTCATCTCCTCCCCC
AATTCATCTCTTGAACCCTAATTTCGTCATCCCATCTAGCTGCACCAAATTTGTGAGAGTTTGTCTCAGATCGTGAGGTGTTCACCCCTTTCTTGATTAC
CCTTGGTTGGCTGCAGTGGGAGCCACTGATTTCGACCACAACTTTGAAAAAGAAAGTGAAGCAGTCCCTTGATCCATCCTTGGAATGAAAACACTCCTAG
CCAGCTTGAACAATATACAATGGTGAAGTTCCATATATATCCAGTAAAGTTGAAAGGTCAACATCTTCTCTGCAGCAACAGCCTTAGCTAAGCAAGCATG
TCGATAGAAGAACGTAGTTGGATGTACAATGGGTGGAATAATAATGGATGTCATTCCCATGAATGGGATGGCACTTGGACCTCCAAGGCGCAGCACATGA
ACTTCGAACAGTACTGCAGTTACAAGTGAGAATAATGATGTTGATCCAGTTGGAACTGAGGAAGAGATTCACTTGCGTGGTAGTTCGCAGCTTCCACCTG
CAATTCCAAATGAGCAAGATCGTCCATTGATTGAACCTTCTGGGAAGACGCACTGGGTTGAAGTCCCAACAGTAGGCAAGGATAGAACACCAGCAAGTGT
TTTAACATGTCTTCTAAAGGATAATCATCCCGGTATAGTTGACTATAGAGGCAAATCAGTGGCGGCATCAAGATGGGTTCACTACAAAGCGGCAAAGGAC
ACAAGTGGATGGTCGGCGGGTGATGAAGTTGAAGCAGGTTTATGGGTAATTCTCTGCAGCATGCTAGGCTACTTATCATTTAATTCTTGAAACTCTATAG
TAGTAGTGCCTCAATTTAACACTAAATGCAACTGAATCAGAGATTAACATTCTAAAATTTGAATCAGAGATTAGTTTCTATTACCTTTCTAAAATTTAAG
TAGAAACCAATTTCTCTTGAATTCAATATAAATGTAAAGCTATTTATATGTTGTACTTACTGTAAGATCAAGGAGCGATCTACATGTTTTTGTGATGAAC
AAATTGATGGTTTACGAGTTAAATGTTTTTGTTATTTTTGACCGGGCGGTCAGACCGCACGTATATGGGCGGTCAGACCGTAGGTATCTGGGCGGTCAGA
CCGGCAGGTTAGCCCCGAAAGTTTCAGCTTTTGGTTTTCTTTTCGGTTTCGGATTTGTTCTTCGTGAGTTCGACTTCTAGTTGGTTTCTATACGTATGGG
TACTGTTGTTTTACTAATCATGACTTAAGTTGGAGATAGCTTGGTCTTGGAGTATGGTTTCTTTGTTTGATTCATGTGTAGGTGACTTGATGCCTCGGGA
GAGTGTTGCCGGTGATAGATCGGGAGTCAACTTGGAGATAAGTTGACGTCTGGCGGTCGAGATATCATGCGGGATACTTAGGCTAGAGTTCAATGCACGT
GGTGGTGAAGATTCCATGTGGCATACGATGGAGATATTGTGTGCGTATGGGATTTGGAAGTTGAGTTTGGATAGAGTCCGGATTTGAGAAGATTTGTTGT
ATTAGAGACAGAGATATGGTTAGTTACGGATAAGGATTGGTTTCCAACGAGATTGCTAGATACGTGGGCCTTGCATACCCACGTTGAGGTTATAAATAGG
TACCGAGGGGTATGCCCCCGGAGAGTTTTTTGTGCCGTTTGAGAGAAAAGTTAGGGTTTCGACTCTATTTTGATTCTAGATCGAAAGTTTTGGTTAGGAG
TGTTTTCTATGCACTTTGTAAACACTGGTTGATCAATAAAAGTCGAGAGATTCAATCTACATCTTGAAGCTTTATCGATCGGCGTTTTTCCA