« Back to Oryza brachyantha search


Detailed information on CNT30551241


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692833Oryza brachyanthaOryza sativa99.4670.2784.45553forward
CNT30370810Oryza brachyanthaOryza glumipatula99.6499.1183.21554forward
CNT30101181Oryza brachyanthaOryza rufipogon99.4616.1884.45553forward
CNT30574622Oryza brachyanthaOryza barthii79.3260.9182.77441forward

Expression of CNT30551241

Peptides detected in this lncRNA

>peptide 1 (42 aa)
HFHCLPFLFFLKLSTHLTSPPQIPSNSPRSSPACHTTRSPRF*

Sequence

>CNT30551241
CATTTTCACTGCTTGCCCTTTCTCTTCTTCCTCAAGCTGAGCACTCATCTCACTTCTCCTCCACAAATCCCATCCAATAGCCCAAGATCCAGCCCTGCAT
GTCATACCACAAGATCCCCAAGATTCTAAGCTTTCCATCCATCCAAATAGCTTGCACATGCATGGAGAGTTGAGAGAGATCCAGAAGGAATAAGAGAGTG
GTGTTTTCCAGCAGCAGCAGCAGTAAGTTTTCCTCCACTTTGCTAGAAGGTGGCTGCAACTCACCCCGATTTCATCTCTTTTGATTTCGGTTTAAGCAGC
CCCTAAGTAACATCTTTTGCCATCAGCCCGGGGCTTTGCTTCATCTCTTGCCGTCATCCCGAGGCCTTAGCCTTGCACAACACCACGTCCAGGCTGCTGC
CATGTGAACCAAGTCTGGTGGAAATTGGAGAAAAAGGGGAGTGAAAAGAGAAATCGATTTTCTAAAATAGTTTGAGCTGAAAAAGATTTGGAGAATCCGG
AGAGTACCGAGCCATATCCAGAGGAGGATAGTGACTACCCTCAGCAGGAAGGCAAG