Detailed information on CNT30551174


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7YJX5|PSBZ_CALFG, E-value = 2e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730493Oryza brachyanthaCorchorus capsularis35.2727.3987.38103reverse complement
CNT30201938Oryza brachyanthaPisum sativum35.2710.286.41103reverse complement
CNT30188310Oryza brachyanthaSecale cereale36.9913.6296.3108reverse complement
CNT30539896Oryza brachyanthaBrassica napus24.324.0787.3271reverse complement
CNT30556046Oryza brachyanthaOryza glaberrima21.233198.3962reverse complement
CNT3068119Oryza brachyanthaLeersia perrieri48.2964.3892.2141reverse complement

Expression of CNT30551174

Peptides detected in this lncRNA

>peptide 1 (34 aa)
SPDGWPNNKNVVFSGTSLWIGLVFLVAILNSLIS*

Sequence

>CNT30551174
TCTCCTGATGGTTGGCCAAATAATAAAAACGTTGTATTTTCCGGTACATCATTATGGATTGGACTAGTCTTTCTGGTAGCTATTCTAAATTCTCTCATTT
CTTAAATGTGTTTAGTATTTAGTAACCCGATACAAAATAAAAAAAGGCCATTTCGTCGAAAAAATTCGGATTGTGAGACGCATTAAAATGCAATTTGCGG
CCCGAATTGATTGACAGACAATTAATAAAAAGAAAACGAAAATAGAAAATGAAACGGTCGACCCAGACATAGACGGTCGACCCAGGCGGATA