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Detailed information on CNT30550879


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Oryza brachyanthaOryza sativa53.873.8899.54216reverse complement
CNT30618959Oryza brachyanthaSesamum indicum22.691.4585.7191reverse complement
CNT30170457Oryza brachyanthaPistacia vera23.697.4887.3795reverse complement
CNT30194121Oryza brachyanthaSecale cereale53.8724.1397.69216reverse complement
CNT30390237Oryza brachyanthaTriticum turgidum53.871097.22216reverse complement
CNT30588877Oryza brachyanthaMusa acuminata40.459.3483.95162forward
CNT30556045Oryza brachyanthaOryza glaberrima53.876.6299.54216reverse complement
CNT3017916Oryza brachyanthaZea mays53.8710.4896.76216reverse complement
CNT30232528Oryza brachyanthaAnanas comosus46.139.3587.03185reverse complement
CNT30596972Oryza brachyanthaOryza meridionalis53.8717.2799.54216reverse complement
CNT30430934Oryza brachyanthaPapaver somniferum23.441.4488.394reverse complement
CNT3057361Oryza brachyanthaAmborella trichopoda21.951.7587.588reverse complement
CNT30332506Oryza brachyanthaDioscorea rotundata23.4410.3288.394reverse complement
CNT30149145Oryza brachyanthaBrachypodium distachyon56.1112.5392.89225reverse complement
CNT30103640Oryza brachyanthaOryza rufipogon45.8924.0599.46184reverse complement
CNT30116311Oryza brachyanthaOryza nivara21.222.6798.8285reverse complement

Expression of CNT30550879

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTYFEMIPILGYYILVPPVVKTLHFEHIVS*

Sequence

>CNT30550879
ATGATCAAACGTGTACCAAAAAATTAACGGCGTCATCTATTAAAATACGAAGGGAGTATGACCTATTTTGAAATGATTCCTATTCTTGGATACTACATAC
TAGTCCCTCCAGTTGTAAAAACATTACATTTTGAACATATTGTAAGTTGATTTTTTAAACTTTGAACATTGATAGTTTTTAAAATAACAACCATCAAGTT
TGTACTTTGGATACCCCTATAACCATCAAAGATCGTTGAAGTGGCTAATTCCTCTAAAAAGGAGGCGTTGAGAACAAAGAAATTCTTGGAGCTATCGTTT
TCCTCTAGCATTAATAGAATTCATTGGTGTTAAGAAAAACCTCTTGTGGGAAGGTTGGCTAGAGATTTCTTGGAAAAATACCAGCCCCTTTCGGTCCATA
A