Detailed information on CNT30550878


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697923Oryza brachyanthaOryza sativa21.0114.1383.02212forward
CNT30110898Oryza brachyanthaOryza longistaminata21.0115.4382.55212forward
CNT30103930Oryza brachyanthaOryza rufipogon21.019.0281.6212forward
CNT30577378Oryza brachyanthaOryza barthii20.718.8583.25209forward
CNT30116682Oryza brachyanthaOryza nivara23.3927.5183.9236forward

Expression of CNT30550878

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MEVLCVCPVDSLLGMQGVELPTRWHGYKMAWMPRGKTISGWPTEPSWLFGYTHGIEIAARK*

>peptide 2 (40 aa)
MSLLLSLLLNFCPLALDSLSGQVLGCNKPCEALLYELLML*

>peptide 3 (51 aa)
MEIKVHGAGTAKVRLSKGFATTVSCVGTKLMCWVVVEHEKSVQPLQCVKSI*

>peptide 4 (31 aa)
MTRYRVYHLLDPGNGIIKHEVIPIPEIGVPQ*

>peptide 5 (36 aa)
MAWIQDGMDATRKNHQWMADRTFMAIWLHSWYRNCC*

>peptide 6 (30 aa)
MDTRWHGCHEEKPSVDGRQNLHGYLVTLMV*

Sequence

>CNT30550878
CCCCTCACTGCTAGTAAAGGACGTCTAGAGTGCAATGGAGATTAAAGTTCATGGAGCGGGCACTGCTAAAGTAAGGTTATCGAAAGGCTTTGCCACGACC
GTCTCATGTGTTGGGACGAAGCTCATGTGTTGGGTAGTCGTGGAGCACGAGAAAAGTGTACAACCACTGCAGTGTGTTAAATCTATTTGAATAGCCGCGC
TCTCGGATATGAGCACCGGGACATGGCATACACTTGGCTAGACTCTTAAAACCCAAAAAGATGATTTTGGTTGGTGAAAATGGAGGTGTTGTGTGTTTGT
CCAGTTGATTCGCTCCTTGGGATGCAAGGGGTTGAATTACCTACAAGATGGCATGGATACAAGATGGCATGGATGCCACGAGGAAAAACCATCAGTGGAT
GGCCGACAGAACCTTCATGGCTATTTGGTTACACTCATGGTATAGAAATTGCTGCTAGAAAATAGGTCTTGTGAAAACTATTTGTGAAAGTTGCTTTTAT
GCAAAAAAAAACCCTATAGCCTCCTTGTTACAACCATGCATGTGCATATTTCCGTGGTGACTTGTTGAGTACCCCGTACTCACCCCTGCTTTGCTCACCA
TCAGTGTTTGAGGAAGACTCAGTTGCAGACCCTTACGAGTGTTTCGAGGACCTCCCTGAAGGAGAAGACGCGTAGTGGTGTCTTGCCTTCCAGTTGTCGC
CTGTGGTGTATTGCCGCTTAGATGTCGCTACTTTTATCGCTTCTGCTTAATTTTTGTCCTTTAGCTTTAGACTCTTTATCTGGTCAAGTGCTTGGTTGTA
ATAAGCCCTGTGAGGCACTGTTGTATGAACTACTGATGCTATGACTCGATATCGTGTGTACCATCTACTCGATCCAGGGAATGGTATAATTAAACACGAG
GTAATCCCGATACCTGAGATCGGGGTTCCACAATAAATTTTTATATGTTTTTTATATGATATTTCTAAAGTAAGACTTTCACTTTATATTGGTTAATTTA
ATCATTTAT