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Detailed information on CNT30550796


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003442, E-value = 3e-108

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692489Oryza brachyanthaOryza sativa33.8647.7886.05430forward
CNT30553012Oryza brachyanthaOryza glaberrima46.3864.9481.66589forward
CNT3067197Oryza brachyanthaLeersia perrieri15.7521.4680.5200forward
CNT30595987Oryza brachyanthaOryza meridionalis52.0554.1884.72661forward
CNT30369872Oryza brachyanthaOryza glumipatula33.8649.8386.05430forward
CNT30105059Oryza brachyanthaOryza longistaminata33.8646.1986.98430forward
CNT30101055Oryza brachyanthaOryza rufipogon45.259.5483.97574forward
CNT30575926Oryza brachyanthaOryza barthii46.370.1784.35588forward
CNT30116356Oryza brachyanthaOryza nivara33.8640.385.35430forward
CNT30603889Oryza brachyanthaOryza punctata34.8839.787.13443forward

Expression of CNT30550796

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MADPIFNGEYGPQNWAIFWASYMHIRIDAIMQVCH*

>peptide 2 (59 aa)
HGLSSSTHSLVLGLVIFPQTCINSRIWNHQTMRSNTSIRPAICPHLQKGFETLGFHAIS*

>peptide 3 (33 aa)
WALFFNPQSCPWVGYIPTDLHQLQNLEPSNHEE*

>peptide 4 (31 aa)
MGSLLQPTVLSLGWLYSHRLASTPEFGTIKP*

>peptide 5 (38 aa)
MVLLHNEALNLHENNAKSSRPCQVLSSSSLGICLCLCA*

>peptide 6 (43 aa)
MCVIIYSILFLFLQTFVHGVLTNSCTKFMCCGYAAGTCSTVQT*

>peptide 7 (76 aa)
MKTFIIKRTEDSVLFSFLRMCRGDYSDSGAGSSSPWKLNTASCQEQMNNEWQIQSSMENMDHRIGLSSGLAICILE*

Sequence

>CNT30550796
CATGGGCTCTCTTCTTCAACCCACAGTCTTGTCCTTGGGTTGGTTATATTCCCACAGACTTGCATCAACTCCAGAATTTGGAACCATCAAACCATGAGGA
GTAACACTAGTATAAGACCAGCCATTTGTCCTCATTTGCAGAAAGGGTTCGAAACCCTTGGATTTCATGCCATTTCTTAGGCATAAACAGTGCCACACCA
TGTCGTTTCATTGCCACTTATAGCATCCCAAGTTGATCCATTTCATTGTTTGCTCCTTTTATTTTAGATAGATGCATACCTTGCCCAATGTGGTGTCTGA
TCTTAAATCTGAAATCTGAGCTCTGAAGGCTGCTGCTTCCATGAAGTGCATTGCTCAGCAGCGATCGATGATCTCTGATTTCACATGTGAGTGATTTTTT
TTCCTTTTGAAAGAAAGATGTGTGTGATCATCTACTCTATTCTTTTTTTGTTTTTGCAAACTTTTGTTCATGGAGTACTAACAAATTCTTGCACAAAGTT
CATGTGTTGTGGATACGCAGCTGGTACATGTTCTACTGTGCAGACATGAAGACCAGTCGAAGAAGTTGTGCCTGTGGCTGCAATTGAGAATCAATCCAAA
TTATAGAAAACAATTCCTAGCTAGAGGCAAATTCAGAACTATTTGCAATTCCAGAACCACAAGCATGGACCAGTGGTAGTTCTCCAAGTAAAAGTTAGGA
GCTAGTTATGGTGGCACTGATTCTTCAGTTTCTTCTATTGATCTAGCAAGTTTTATGGCAGAAGAAAAGCTAGTGCAGACCTCCAAGCCATGAAAACATT
TATCATCAAGCGAACTGAAGATTCTGTTCTTTTTTCTTTTCTTAGGATGTGCAGGGGAGATTATTCAGATAGTGGAGCAGGTTCAAGTAGCCCTTGGAAA
CTCAACACAGCTTCTTGTCAAGAACAAATGAACAATGAATGGCAGATCCAATCTTCAATGGAGAATATGGACCACAGAATTGGGCTATCTTCTGGGCTAG
CTATATGCATATTAGAATAGATGCAATCATGCAAGTGTGCCACTAGTAGTTTTCTGAAGGAGAGATTAGGTAGTACTTTAGCATGTAATGGTCCTACTGC
ATAATGAAGCACTCAACTTGCATGAAAACAATGCTAAGTCCAGCAGACCTTGCCAAGTTCTCTCCTCATCCTCATTAGGTATTTGCCTTTGCTTGTGTGC
ATGAACATCCTAAGTTTTTATATTTGCTTGAGAATCCTGCAACCGAGATTAGTTTGGAATTTAGTTGAGC