Detailed information on CNT30550760


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT307001Oryza brachyanthaZea mays18.6932.9283.49212reverse complement
CNT30596576Oryza brachyanthaOryza meridionalis14.027586.16159reverse complement

Expression of CNT30550760

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGRLSPRQAGGGQAAERWGERGEAESSPVRGNGEGPIACQSRELARPAGS*

>peptide 2 (36 aa)
MIISCLSMGYVGIFKRIRHFIFHTPKVRSTTLRALE*

>peptide 3 (57 aa)
KIPIHRPQPPTLTSGEALVLSTLILSPLHSPDLGAGALGGARKVGLWRASGRPTASR*

>peptide 4 (56 aa)
QNPHPQTTATHSHLWRGPRSLNSHSLTSPLSRSRGWGSGRRAEGRPVASERQANGE*

>peptide 5 (33 aa)
PKSPSTDHSHPLSPLERPSFSQLSFSHLSTLQI*

Sequence

>CNT30550760
CCAAAATCCCCATCCACAGACCACAGCCACCCACTCTCACCTCTGGAGAGGCCCTCGTTCTCTCAACTCTCATTCTCTCACCTCTCCACTCTCCAGATCT
AGGGGCTGGGGCTCTGGGCGGCGCGCGGAAGGTAGGCCTGTGGCGAGCGAGCGGCAGGCCAACGGCGAGTAGGTAGGTGGCGAGTGACCAACATGCCGGC
GACGGGAAGGTAGCAAGCTAGCGGGTGAGCGGCAAGCAGGTAGCAGGTCGGCGATGGGTCGGCTGTCTCCTCGGCAGGCCGGCGGCGGGCAGGCGGCCGA
GAGGTGGGGGGAGAGGGGAGAGGCGGAGAGCTCGCCTGTCAGGGGGAACGGCGAGGGGCCGATAGCCTGTCAGAGCAGAGAGCTCGCCCGGCCGGCCGGA
AGTTGAGCAGGCGACTAGCGGCGTCCGGGGAAGTGGAGCAGGCGACTGGCAGCGTCCCTGGGAAGCAGGCGGCCGACGACGTTCGTGGGGGAGCACTCTA
CCGACGGCGTCCGTGGGGTAATCCCGGCGGCAACGGGCCATCAACGCCATGGAGCCGACGGCTGCAGCGGAGGAGCGGGCGGGCGGCGGCGGTAGAGGAG
CGAGTAGCTGACAGGTATGGTCGGGACATAATCTAGATCACGATCACACCTACGAAAATACTTGTGGGATGTACAATTCTGACGTATAAAGTTATGGAGA
CACATTGTCGAAGCAATGATCATTTCTTGCTTGTCCATGGGATATGTAGGCATCTTTAAAAGGATTCGCCATTTCATCTTCCACACACCAAAGGTTCGCT
CAACGACATTGCGTGCACTTGAGTGACACTGATTGAAATACTCTTGCTCTCCACTTGGAGGAGGTCCATTTCTCCATTCAGGAACATGATACCTTTGGCC
CTTGTATGGTGACATATATCCTGGTCTATTTGGGTATCCAGCATCTACAAGATAATATTTACCTACAATATAAAAATTGAATATTTATATGACTAAAAAA
TAAGACAAATTAAAATTTTCAAAAGATCTGCAATTGCATACCTTGTGGGGGATGTGGAAATATATCTTTATCAACCTCTAATGCATGATAAAGAACACTA
GTGTCATGCATAGAACCAGGTTGTCCAATAGAAG