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Detailed information on CNT30550711


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-117

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Oryza brachyanthaOryza sativa100.1432.1391.01701forward
CNT30190515Oryza brachyanthaSecale cereale61.8651.6793.07433forward
CNT30303356Oryza brachyanthaTriticum aestivum66.1450.1692.01463forward
CNT30397375Oryza brachyanthaTriticum turgidum6626.5591.34462forward
CNT30553813Oryza brachyanthaOryza glaberrima74.8656.0488.55524forward
CNT30667831Oryza brachyanthaTriticum dicoccoides6660.3191.34462forward
CNT30460404Oryza brachyanthaSaccharum spontaneum6614.690.26462forward
CNT30368600Oryza brachyanthaSorghum bicolor74.5765.0988.7522forward
CNT30595696Oryza brachyanthaOryza meridionalis100.1465.9592.15701forward
CNT30107350Oryza brachyanthaOryza longistaminata91.5774.2888.92641forward
CNT30100520Oryza brachyanthaOryza rufipogon100.1470.6789.73701forward
CNT30575387Oryza brachyanthaOryza barthii73.5790.0391.26515forward
CNT30115854Oryza brachyanthaOryza nivara91.5785.0191.11641forward

Expression of CNT30550711

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSRVIVLPVRVLTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILALTLSIVSEDSTSRVIVLPVRVLTKICMPPLRRRTR*

Sequence

>CNT30550711
ATCCCACTTATTCATAACCCAAACTGCTGTGCCACAGCAACTGTTTCATAAAACCAACACATCATAGGGACTCGATGGTACGGTGAGGCAGACACAAGTA
GACATCAGCACCACTAATACTTGACGAACAGAGGCACGGGACGACCAGGAACACCAGCAGCTTCACCAAGCTGGCAGATTACTGACCACCACGGAGACGG
AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCG
GGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCTGAGCTCTCAACCTCCAGAGTGATCGTCTTGCCTGTGAGGGTCTTGAC
AAAGATCTGCATACCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTGCCATCCTCGAGCTGCTTG
CCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCAAGGG
TGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATGCCTCCCCTGAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC