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Detailed information on CNT30550642


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690864Oryza brachyanthaOryza sativa29.047.9190.34176forward
CNT30100352Oryza brachyanthaOryza rufipogon29.044.9190.34176forward
CNT30115849Oryza brachyanthaOryza nivara29.0415.5690.34176forward

Expression of CNT30550642

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPCLSTAFLNFSCGSLTSSPEKYISSLESL*

>peptide 2 (44 aa)
MPFHSFLELLLWLTHFITGEVHIIIGKLIGRARRGSRKLWEEMA*

>peptide 3 (53 aa)
MCLYSKNKSKCWDWEYIHRNKQKGLGLQQQRDGTWYQRKGADAWAPPLVQAHM*

Sequence

>CNT30550642
GCATGGCCTAGCTAGCTCGCTGAGGCTGAGCTAGCAGCTGGTTCTTGGTTGTATATAAAGAGAGCTAGGATCAAAGAGAGGCTATGGCATGGAGATTTTG
CAATGTGCAGTGCAGTGTATGCATGTAGCATGAGGATCTCTCTTCCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCTTGTGGCTCACTC
ACTTCATCACCGGAGAAGTACATATCATCATTGGAAAGCTTATAGGGAGAGCAAGAAGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATAACAAGGACT
TTGAATTCAGTTAGCCATTGAGAGAAAGAAAGAGATGTTATTTTTCCATTGATTTCATGTGTTTGTACTCCAAAAATAAATCAAAGTGCTGGGACTGGGA
GTACATCCATCGCAACAAACAAAAAGGCCTTGGGCTCCAGCAACAGAGGGACGGCACATGGTACCAGCGGAAGGGCGCTGACGCCTGGGCCCCACCTCTG
GTCCAGGCCCACATGTAGTGTCAGCAGCTCTCGTGCTGTGACAGGTAGGCTGCTCAGACAGATCGACCGGACGATGTGATTTTACCCCCTCAGATCTCAC
TCACCC