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Detailed information on CNT30550541


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40479|ERF2_TOBAC, E-value = 7e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692625Oryza brachyanthaOryza sativa7.7344.8489100forward
CNT30254792Oryza brachyanthaAvena sativa16.2446.9895.24210forward
CNT30474096Oryza brachyanthaSaccharum spontaneum7.525.4685.5797forward
CNT30101508Oryza brachyanthaOryza rufipogon13.0764.7594.67169forward

Expression of CNT30550541

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MAMDAAAASPLFLRFGVPEEEDEEDEGEEESELAGRGYGRLLPAAAAAAAAISEPMRRGKLRSAREPRMR*

>peptide 2 (40 aa)
MAELPVELVTFLGAGHCPPSRCSVHPWRACSVQELSYALF*

>peptide 3 (36 aa)
MKGKRSRSSPAGDMAACCPRLLRPRRRSRSRCGEGS*

Sequence

>CNT30550541
GGCCTTACCTATAAGCCTGGACTGTTTCTCACTTGGTAGTAATTAATTCTTGTGATTTGAGAATTCATCTGCAACCTTTGACATACTTTTGTCTTTGCTA
CATCATGGTGGAGATTTGCAATTTTCTCATCCATTTACAGTTTGCCAGTTTGGTGTACGCTGGGTTTTTTTTAATGTGTTTAGATGGTTGAGATTGAACC
ACTACTTAAGTGAGATCTGACGTTCGCTAAACGATAAAACAGCAACCTGCTATTGTTTGAAACCGATGACTGATAGGGCGACTATTATACCAAAGACCAA
AGATTATTCTCCCTTTTAGAATCTAGAGACGGTTTGTGCAAAGTCTTCTTTTTTCCTTTTTAAAATTTTGTGCAAGTCTTACAAACCATCACCACATTTC
ACAACCAATCCTTTTTTTTTTCATTTTTTTCCTGGTCCGCTGCGGCAATCATCGACGAACAGCTCGACTCGACGGAGGAACAATGGCGGAATTGCCTGTG
GAACTCGTCACATTTCTTGGAGCAGGGCATTGCCCCCCTTCCAGATGCTCTGTTCATCCTTGGAGAGCGTGCTCTGTTCAAGAACTGAGTTATGCTCTGT
TCTGATTTCTGAACTCGCTTGATCCATCAAGCAGCTTTGATCATGCGCACGATGGCTAATTGCCACTACCAGATCGCCACTTAGCTCACTAGCTGCTGGA
CCGGACCGGCGGTGAACCACGGCTGAGGCGGGAGGGCCAGCTGGCGGGAGGGCCAGCTGGACTGGTGCCTGCGCCGGTGGAGGTGGCACGAGGGCCATGG
CCATGGACGCGGCCGCGGCCTCGCCTCTCTTCCTCCGCTTCGGTGTCCCGGAGGAGGAGGACGAGGAGGATGAAGGGGAAGAGGAGTCGGAGCTCGCCGG
CAGGGGATATGGCCGCTTGTTGCCCGCGGCTGCTGCGGCCGCGGCGGCGATCTCGGAGCCGATGCGGAGAGGGAAGTTGAGGAGCGCGCGGGAGCCGCGC
ATGCGGTAGGCGGCGCGGTCGTACGCCACGGCGGCTTCCTCGGCGGAGTCGAACGTGCCGAGCCACACGCGGGCGCCGTTCTTGGCCGGGTCCCTGATCT
CCGCCGCGAACTTGCCCCACGGCCGCTGCCTCACCCCGCGGTAGTGCTTCCCCCTCGACGCCACCGCCACGGCCTCGCCCTCGCCCTCCGCCTCCTCCCT
CCCGGGCGTCATCGCCTCCTCCGTCGACGTCACCTCCCCGGGCGTCTCCGGCCCGGACGACGACGCGAGAAAGCTGCCGATGGAGGATCCGTC