Detailed information on CNT30550519


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000626, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552010Oryza brachyanthaOryza glaberrima23.7838.590.94298reverse complement
CNT30574602Oryza brachyanthaOryza barthii37.5940.3992.14471reverse complement

Expression of CNT30550519

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMNTLCMYCGVLSLDEAWAGKLFLVVISDQ*

>peptide 2 (37 aa)
MAWRTCNGSRLASLSVPRLAGIAEVVPRLVLAQFGGA*

>peptide 3 (52 aa)
MWKLFFSALCFDLLCSFSKYIPCFCVPFGAYRFMNNNLDDEYSLYVLRCLES*

>peptide 4 (54 aa)
GTADPTASNASAPLNPSRAHPAFVDNYSRSAAPDPSGGGAKPPVVAISPLGATM*

>peptide 5 (88 aa)
MELPILDGNCNLIRAPGITLHYHLRIEMKEDLPKLSSCPTWPSTCLEDIFTAPIVEASSSTPPATKLRSSENTACSACRAAVSGHCWG*

>peptide 6 (57 aa)
MFCMQGSGVRPLLGIERNPGEGSSMEDTVFGFIYRVPMRFLSSSGSLGGGVPFHRPK*

>peptide 7 (88 aa)
APQIRRPVTPQPLSIRAGRTRHLLTTTAGRPPRTRAAAAPSRQWSPSRRWELRCSGGRRGWRGGHVTGVGWHRSRFPALPESPRSSRG*

Sequence

>CNT30550519
GGCACCGCAGATCCGACGGCCAGTAACGCCTCAGCCCCTCTCAATCCGAGCCGGGCGCACCCGGCATTTGTTGACAACTACAGCCGGTCGGCCGCCCCGG
ACCCGAGCGGCGGCGGCGCCAAGCCGCCAGTGGTCGCCATCTCGCCGCTGGGAGCTACGATGTAGCGGCGGCCGGCGGGGATGGCGTGGCGGACATGTAA
CGGGAGTAGGTTGGCATCGCTCTCGGTTCCCCGCCTTGCCGGAATCGCCGAGGTCGTCCCGCGGCTAGTCCTCGCGCAGTTCGGGGGAGCTTAGCCGCTA
AGACGTATGGCGTCTCAGAGCTTCAGCAGCGCTACGGAGGTCTAGAAGAAAGCGGCGGCCTTGCTGTACGAAGGGGAGGACATGAACGGCTTCTGGTAGG
AGCTCGCGCGGAGGTTCAGAGGCCCGACCACACCACACTAATCATGCCCGACGCCCTGACTCCTGAGAAGCATGGAGCTCCCTATATTGGATGGTAACTG
CAATTTGATCAGAGCTCCGGGGATAACACTCCATTACCATCTTCGCATCGAGATGAAGGAAGACCTGCCAAAGTTGTCTAGTTGCCCTACATGGCCTAGC
ACCTGCCTAGAGGATATCTTCACAGCACCAATCGTTGAGGCGTCGTCTTCAACACCGCCGGCGACGAAGCTGAGAAGTAGTGAGAACACTGCATGTTCTG
CATGCAGGGCAGCGGTGTCAGGCCATTGTTGGGGATAGAGAGGAATCCAGGAGAAGGGTCCTCCATGGAAGATACTGTGTTTGGTTTCATTTATAGAGTG
CCCATGAGGTTTCTTTCATCAAGTGGAAGCTTAGGTGGTGGAGTGCCTTTTCACAGACCCAAATGAGGTATCTTCCTTAGCATATTCCTTAGCATGTGGA
AACTTTTTTTTTCTGCTCTATGCTTTGATTTGCTTTGTAGTTTTTCAAAGTATATTCCATGCTTTTGTGTGCCTTTTGGGGCCTATAGGTTTATGAATAA
TAATTTAGATGATGAATACTCTCTGTATGTACTGCGGTGTCTTGAGTCTTGACGAAGCATGGGCTGGAAAGTTGTTTTTGGTGGTGATCAGTGATCAGTG
ATCACCCAGAGCGGATCTTGCGTCATGGACCTAGGTAGCAGCTGAACAGTTTTGGCTGGCCTTGCATTGTGCCTGTCAGATCAGTTCTTTACTTGATGCA
CTGTTGTTGTTTATGCATGGAACTCAATACTAACCATATGCAGATTCCAGAAC