« Back to Oryza brachyantha search


Detailed information on CNT30550451


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001318, E-value = 2e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696610Oryza brachyanthaOryza sativa4.1921.5996.4957forward
CNT30596367Oryza brachyanthaOryza meridionalis6.2527.9691.7685reverse complement
CNT30104049Oryza brachyanthaOryza rufipogon11.3329.1785.71154forward
CNT30576202Oryza brachyanthaOryza barthii5.1520.7195.7170reverse complement

Expression of CNT30550451

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MILLIFACGASVSDSDVQGKVGPTLRSRASPAEVANMWPCGHVLSISECLSNLRPNHA*

>peptide 2 (53 aa)
MCRGKLDPLSAPALVRLKWPTCGHVAMSFPFQNACQIFDQIMLRDRLDSGTMNF

>peptide 3 (40 aa)
MEVPLRSELFRRRSFACGREPYPLELVYLFLSAAFPLESL*

>peptide 4 (30 aa)
VRLNREGYVTGSITVFFPVCHGGMSAHVQV*

Sequence

>CNT30550451
GTGCGATTAAATAGGGAGGGTTATGTGACAGGTTCTATCACGGTCTTCTTTCCGGTATGCCATGGTGGTATGTCGGCGCACGTTCAAGTGTAGTGGAGTC
GTGTCTTGTGGGTACAGTAGTACACCTCTGATCAGAGTATAAACTATTCGAATAGCCGTGCCCACGGTTACGGGCGAACTCCCAGCTTCACTGTGATTAG
TGAACCTTAATAACTTGAGTAAACTGGTTATTACTCGGGACTACTGCAACGTGGTGTAACGTTGAGTAGTGGTTGGGCCTGTTGCAACGTGGTGTAACGT
TGGACAGTGTTGTGGTATTTTACAACTGTTATTTACTTATCCTTTACTGTATTCAATTACCTTTACTCTTTGCAAATCTCTGTTATTTGGTTAACTGCTG
CTCTATTGCAACTAACCCTAGCCTGTCCTTGTTAATCCCTATGCATCATTTATCTCCCCTTTTCCGTGTTACTTGTTGAGTACGGTGGTTTGTACTCAGC
CTTGCTTAACTTTCCCCATCCAGAGCTTGAAGTTGAGTCCGATGGAGGTGCCTCTCAGGAGTGAGCTGTTCCGTCGTCGAAGCTTTGCCTGTGGACGGGA
GCCGTACCCGCTGGAGCTAGTCTACCTTTTTCTTTCCGCTGCATTTCCGCTAGAATCACTGTAATTTTCAGTTGTTTCTAAGAACGATGGTTATATAATC
AACATTGTCTTTTTGTGTACCCTGGCTGGTCCTGGACAGGGATTTAATACACAATTAAGTTCAGAAATTCGTGTGAGGAATTTCTAGGCGTGACAACTAC
CACATAAATTCTTATCGCTAATAGGTCACAAAGCCTATGAATGGTGAATGAAGACCTCTTACCGATGGGATCATATTAATGGCTAGTGGTTTCAAACCGT
TGCGTATGACCTTGATGTCCTATTTGTAACGATTTGTACCTGTTTGACCAATTTGTTCTTTGGGTTGGTATCTCTAGATTTAGTGTAGAGAGAGAGAGGA
GGAAAAAATTCAATTTATTTATTTTTATGTACATAATTTATAAATTTATTGAGACCAAATTTCTTGTATAGTTTCTTCAAATATAGGTGTGTATTTGCTT
TGTTTATGAATTTTTTTCGGTGTAGTAATTATTTTCGTTTATAACATTGGTATGATTTTGCTGATCTTCGCGTGCGGTGCCAGCGTGTCAGATTCAGATG
TGCAGGGGAAAGTTGGACCCACTCTCCGCTCCCGCGCTAGTCCGGCTGAAGTGGCCAACATGTGGCCATGTGGCCATGTCCTTTCCATTTCAGAATGCCT
GTCAAATCTTCGACCAAATCATGCTTAGAGACCGTTTAGATTCAGGGACCATGAACTTT