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Detailed information on CNT30550386


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Oryza brachyanthaSetaria italica98.5536.1387.82271forward
CNT30530404Oryza brachyanthaEucalyptus grandis73.8257.1889.16203forward
CNT30316147Oryza brachyanthaCorylus avellana73.8227.2586.7203forward
CNT30703138Oryza brachyanthaQuercus lobata54.1828.4485.91149forward
CNT30500451Oryza brachyanthaCoffea canephora66.1817.0680.22182forward
CNT3021362Oryza brachyanthaCitrullus lanatus46.5519.6682.03128forward
CNT3068683Oryza brachyanthaQuercus suber54.1830.2885.91149forward
CNT30524728Oryza brachyanthaPhaseolus vulgaris4422.4182.64121forward
CNT30506399Oryza brachyanthaNicotiana attenuata50.9142.380140forward
CNT30710642Oryza brachyanthaGlycine max38.1811.2381.9105forward
CNT30182233Oryza brachyanthaSecale cereale66.9129.5888.04184forward
CNT30289293Oryza brachyanthaTriticum aestivum43.2739.1490.76119forward
CNT30223417Oryza brachyanthaHordeum vulgare74.9190.7585.92206forward
CNT30590847Oryza brachyanthaMusa acuminata96.7358.2180.45266forward
CNT30539234Oryza brachyanthaBrassica napus97.8229.481.41269forward
CNT30143836Oryza brachyanthaMedicago truncatula45.4521.4483.2125forward
CNT30244810Oryza brachyanthaAvena sativa85.4529.0883.4235forward
CNT30261302Oryza brachyanthaBrassica rapa97.8252.0381.78269forward
CNT30455867Oryza brachyanthaSaccharum spontaneum10041.9892.73275forward
CNT30131528Oryza brachyanthaLolium perenne97.8258.3588.48269forward
CNT30231964Oryza brachyanthaAnanas comosus50.5511.3984.89139forward
CNT3066796Oryza brachyanthaLeersia perrieri66.9147.387.5184forward
CNT30653881Oryza brachyanthaRosa chinensis50.9113.1186.43140forward
CNT30718631Oryza brachyanthaMalus domestica golden85.0940.7782.05234forward
CNT30339698Oryza brachyanthaEragrostis tef98.5521.9488.56271forward
CNT30363710Oryza brachyanthaSorghum bicolor65.0930.4993.85179forward
CNT30595456Oryza brachyanthaOryza meridionalis66.9132.2888.59184forward
CNT30355562Oryza brachyanthaLactuca sativa46.5521.9682.03128forward
CNT30570592Oryza brachyanthaVitis vinifera50.1842.7284.78138forward
CNT30645151Oryza brachyanthaCannabis sativa38.5511.1283.96106forward
CNT3055709Oryza brachyanthaAmborella trichopoda40.7317.1383.04112forward
CNT30105598Oryza brachyanthaOryza longistaminata10039.9196.36275forward
CNT30319856Oryza brachyanthaAsparagus officinalis9694.2984.09264forward
CNT30574680Oryza brachyanthaOryza barthii10030.0295.64275forward
CNT30580197Oryza brachyanthaEchinochloa crusgalli10033.3792275forward
CNT30499107Oryza brachyanthaDigitaria exilis98.5569.3187.08271forward
CNT30115589Oryza brachyanthaOryza nivara10019.2795.64275forward
CNT30594668Oryza brachyanthaEragrostis curvula83.2767.9583.41229forward
CNT30603529Oryza brachyanthaOryza punctata10035.9598.55275forward
CNT30174824Oryza brachyanthaVigna angularis71.6420.7481.22197forward
CNT30337932Oryza brachyanthaCynara cardunculus47.6415.9883.21131forward
CNT3064271Oryza brachyanthaSelaginella moellendorffii74.9137.4580.58206forward

Expression of CNT30550386

Peptides detected in this lncRNA

>peptide 1 (33 aa)
GDHHRPHWYWSGETLPQSSWPIQACSVFQPHWI*

>peptide 2 (29 aa)
MGSTTSCRITSKRGFARWCATLSLRPVKKL

>peptide 3 (90 aa)
EGITIDLTGTGQEKPCPNPLGQSKHVQCSNHIGYDGLDGVVLVVHGAGGAGEVVDLVDLEQDGLDDVVPDHLEARVREVVRHVVLAPREEV

Sequence

>CNT30550386
GAGGGGATCACCATAGACCTCACTGGTACTGGTCAGGAGAAACCTTGCCCCAATCCTCTTGGCCAATCCAAGCATGTTCAGTGTTCCAACCACATTGGAT
ATGATGGTCTTGATGGGGTTGTACTTGTAGTGCACGGGGCTGGCGGGGCAGGCGAGGTGGTAGATCTGGTCGACCTCGAGCAGGATGGGCTCGACGACGT
CGTGCCGGATCACCTCGAAGCGCGGGTTCGCGAGGTGGTGCGCCACGTTGTCCTTGCGCCCCGTGAAGAAGTTGT