Detailed information on CNT30550371


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066602Oryza brachyanthaLeersia perrieri28.6557.3684.77768forward
CNT30595602Oryza brachyanthaOryza meridionalis14.662989.31393forward
CNT30109999Oryza brachyanthaOryza longistaminata20.7442.5188.13556forward
CNT3099527Oryza brachyanthaOryza rufipogon14.7325.8588.86395forward
CNT30115488Oryza brachyanthaOryza nivara14.7331.1389.11395forward

Expression of CNT30550371

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MKIKLNIRTKLLWQYHRFSYSGTCTFELGALLKFLLFHGSTDEVIDSVRVNNHQNSH*

>peptide 2 (88 aa)
APQIRRPVTPQPLSIRAGRTRHLLTTTAGRPPRTRAAAAPSRQWSPSRRWELRCSGGRRGWRGGHVTGVGWHRSRFPALPESPRSSRG*

>peptide 3 (82 aa)
MIMHSIKRAPGITLHYHLRIEMKEDLPKLSSCPTWPSTCLEDIFTAPIVEASSSTPPATKLRSSENTACSACRAAVSGHCWG*

>peptide 4 (76 aa)
MPDALTPEKHGAPYIGWKHGVAIMRYVKFLCSNGFKWQTPEEYNAVINSYKHLRMICFMLQSLGMLPMELWIIMLG*

>peptide 5 (37 aa)
MAWRTCNGSRLASLSVPRLAGIAEVVPRLVLAQFGGA*

>peptide 6 (43 aa)
MKLLIQFVSITIKIHINTLQSSYHQTAILQTLGHYLREKKTCI*

>peptide 7 (52 aa)
MWKLFFSALCFDLLCSFSKYIPCFCVPFGAYRFMNNNLDDEYSLYVLRCLES*

>peptide 8 (54 aa)
GTADPTASNASAPLNPSRAHPAFVDNYSRSAAPDPSGGGAKPPVVAISPLGATM*

>peptide 9 (29 aa)
MLSSFALMGLNGKLQRSIMLSLILTNIYV*

>peptide 10 (30 aa)
MVISLAILKFSNFVQKNILQKNGYLICHAI*

>peptide 11 (35 aa)
MQNFCESCGHYIVSYKILMKFLCILDNDEINEDQA*

>peptide 12 (57 aa)
MFCMQGSGVRPLLGIERNPGEGSSMEDTVFGFIYRVPMRFLSSSGSLGGGVPFHRPK*

Sequence

>CNT30550371
GGCACCGCAGATCCGACGGCCAGTAACGCCTCAGCCCCTCTCAATCCGAGCCGGGCGCACCCGGCATTTGTTGACAACTACAGCCGGTCGGCCGCCCCGG
ACCCGAGCGGCGGCGGCGCCAAGCCGCCAGTGGTCGCCATCTCGCCGCTGGGAGCTACGATGTAGCGGCGGCCGGCGGGGATGGCGTGGCGGACATGTAA
CGGGAGTAGGTTGGCATCGCTCTCGGTTCCCCGCCTTGCCGGAATCGCCGAGGTCGTCCCGCGGCTAGTCCTCGCGCAGTTCGGGGGAGCTTAGCCGCTA
AGACGTATGGCGTCTCAGAGCTTCAGCAGCGCTACGGAGGTCTAGAAGAAAGCGGCGGCCTTGCTGTACGAAGGGGAGGACATGAACGGCTTCTGGTAGG
AGCTCGCGCGGAGGTTCAGAGGCCCGACCACACCACACTAATCATGCCCGACGCCCTGACTCCTGAGAAGCATGGAGCTCCCTATATTGGATGGAAACAT
GGAGTCGCTATAATGCGTTATGTTAAGTTCCTTTGCTCTAATGGGTTTAAATGGCAAACTCCAGAGGAGTATAATGCTGTCATTAATTCTTACAAACATC
TACGTATGATATGTTTTATGCTTCAGAGTTTAGGCATGCTACCCATGGAGCTATGGATAATTATGTTAGGTTAGCACCTAGCTGATGCTTCCAAACTGTG
CTCAAGAGTGTGATTCTTGTCATTGATTGGCAATTGTTGAAGATATACTAAGAGCATCTTCAAGAGAATGGTCATCTCACTTGCCATACTAAAATTTAGC
AATTTTGTACAAAAAAATATCCTCCAAAAGAATGGCTATTTGATTTGCCATGCCATTTAAATAGCTAAACTTGAGTCCTCAATTACCTAATCTAGGAACT
CATTCCCTCACTAGCCCAATTGCTATCCGTGGATTCCACGTGGGTGGGACCCTCTTGTCATCCTTTCCTAGCTAGTATTTGGAGAGTGGGGATGGATAGC
CTCTTGGAGATGCTATATGAATTCGAGTTCCAAAACTAAAATGAATGGCTAAACTTTGATTTGGAGAGTCAAAATTTAGCTATTCTCTTGGAGATGCTCT
AATAGTACACCCAGGTAAAATTGGAATAGTTTCATTTTAGACAAAGGTGTAGTCATAAGTAAACATGAACTGAGAGGCCTGAACATTGTGAATCTTGAAG
GTAGCTAACCCCATTTTTCTTTTTCTTTTTTTGTTGGTGAGGATTATTTCCCAATTGTTGTTCAAGCTAAAGGTCTAAATCTCCCAATTCAGAGTTGAAC
CACTCCTAAAAACATGAGTTCAAACTCCTAAATCAAATCAAGGAACTTTATCTGACATGTTTTGATAGTGTCAACATTTCAGAGAGAAAGTAAAGCACCA
TATGGAATGCAGAACTTCTGTGAATCTTGTGGGCATTATATTGTTTCATACAAAATTTTAATGAAATTTTTATGCATTCTAGACAACGATGAAATAAATG
AAGATCAAGCTTAATATAAGGACGAAGCTTCTTTGGCAATATCACCGGTTCAGTTATTCTGGAACCTGCACCTTTGAATTAGGAGCATTGCTGAAGTTTC
TGCTGTTCCACGGCAGCACTGATGAAGTTATTGATTCAGTTCGTGTCAATAACCATCAAAATTCACATTAACACACTTCAATCTTCGTATCACCAAACTG
CAATTCTGCAGACCCTAGGTCATTATTTGAGGGAAAAGAAGACATGTATCTAGGATCATGAAGTCATATGTTTGGTTAACAAGAAGCACCTGAATTATTT
CTTCATGCTCAATCAATCTATTGAAACTTTGTAACTGTATCTATGATAACTTCTCTACTAATATGATGCATCAGAAATCTTAGTACACAATCAAATTTAA
CATAGTGTGAAGTAGGGTATTATGTCCTCTATCGCTGGGGCTTTGCATTTCCCAGATAACAGTAACCAAACACTCACCTGAGCTTTTCAACTTAAAAAAG
CAAAAGTTGACACGACAAATACTAGTCCGCCACAAAAGATACAGTAGCCTCCACAACAAGAGCACTACTTCTGATTATTGTACTTCTGTAACGGAAGAAC
TTATACATGATCATGCATTCTATTAAAAGAGCTCCGGGGATAACACTCCATTACCATCTTCGCATCGAGATGAAGGAAGACCTGCCAAAGTTGTCTAGTT
GCCCTACATGGCCTAGCACCTGCCTAGAGGATATCTTCACAGCACCAATCGTTGAGGCGTCGTCTTCAACACCGCCGGCGACGAAGCTGAGAAGTAGTGA
GAACACTGCATGTTCTGCATGCAGGGCAGCGGTGTCAGGCCATTGTTGGGGATAGAGAGGAATCCAGGAGAAGGGTCCTCCATGGAAGATACTGTGTTTG
GTTTCATTTATAGAGTGCCCATGAGGTTTCTTTCATCAAGTGGAAGCTTAGGTGGTGGAGTGCCTTTTCACAGACCCAAATGAGGTATCTTCCTTAGCAT
ATTCCTTAGCATGTGGAAACTTTTTTTTTCTGCTCTATGCTTTGATTTGCTTTGTAGTTTTTCAAAGTATATTCCATGCTTTTGTGTGCCTTTTGGGGCC
TATAGGTTTATGAATAATAATTTAGATGATGAATACTCTCTGTATGTACTGCGGTGTCTTGAGTCTTGACGAAGCATGGGC