Detailed information on CNT30550281


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369058Ipomoea trilobaSorghum bicolor58.0999.8795.02783reverse complement
CNT30434077Ipomoea trilobaPapaver somniferum82.2799.6495.941109reverse complement
CNT30497572Ipomoea trilobaDigitaria exilis60.0995.5295.93810reverse complement

Expression of CNT30550281

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQRNRTEIL*

>peptide 2 (43 aa)
MIRFSGLLATSRAANRPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 3 (32 aa)
MKYECPRLSLLIITPIPKANVIGPKSYNVIPC*

>peptide 4 (75 aa)
PEACARTRRLNNKRVLWSFCCAGFDNDPSAGSPTETLLRLLLPLNDKVQWTSRDVAGSEPPTSPRSEHFTGSFNR*

>peptide 5 (44 aa)
MKFQRLPGPVGQGYMLVEYISVARVRPRTSKGITDLLLPQTSAA*

Sequence

>CNT30550281
CCCGAGGCATGCGCCCGGACGAGGAGATTGAATAACAAACGCGTTCTCTGGTCGTTCTGCTGTGCAGGTTTCGACAATGATCCTTCCGCAGGTTCACCTA
CGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCCGA
ACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAAT
TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATATGCTCGTTGAATA
CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAAGA
AGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACG
GCCATGCACCACCACCCATAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCCTTACTATCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTT
TCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTTAAAGCAACATCCGCCGATCCCTGGTCGGC
ATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTT
GTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACGT
AATAGGACCGAAATCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGC
ACGACCCGGCCAATTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGACGAGACGACCGGTGCACACCCTGGGGGCGGACCGGCCGGCCCATCCCAAAGTCC
AACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTT
AAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGATCGAGCCC