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Detailed information on CNT30550009


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A2J6KL39|NLTP_LACSA, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697881Ipomoea trilobaOryza sativa1122.2285.9464forward
CNT30589697Ipomoea trilobaMusa acuminata11.3421.1587.8866forward
CNT30104115Ipomoea trilobaOryza rufipogon11.5122.2688.0667forward

Expression of CNT30550009

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MPAARFLRHPQAVWRSAVVLAAAASFLTPSQQAGVNCPLPVM*

>peptide 2 (41 aa)
MAASAWGATTTMHNTAITKLRFAIALICFDLIDLGIERQDI*

Sequence

>CNT30550009
AACAAAAACATATATGAAACGACAATCCCAGTCAAATTAAAAAGACTGTTTTTTTCCTTCTTAGTTTTAGTTGGTCAGCTATGAACAATCTATTCCCCTT
TTTAGTTTTAGCATCTGCAGTCCAACTATAAGTTTAGGCTTTTAGTTGAGATGGAATACATGCTTTAATTAGCTAGTCAACTATGAACAACATAGATTAA
GTTATGCTTACTTGGAGCAGTCGGTGGAGGTGCTGATGGGGTAGCCGACGTTGACGTGGCATTTTCCAGGGATGCCGGCGGCGAGATTTTTGAGGCATCC
GCAAGCGGTCTGGCGGTCGGCGGTGGTTTTAGCTGCGGCGGCGAGTTTCTTAACGCCATCGCAGCAGGCTGGGGTCAATTGTCCCTTGCCCGTGATGTAA
TTGAAACAACCGCCTAAGCTACCCGCCACGGTGCCGCAACTAATGGCGGCCTCAGCGTGGGGCGCAACCACCACCATGCACAACACCGCAATAACCAAAC
TAAGATTTGCCATTGCTCTGATATGCTTTGATCTAATAGATCTAGGAATTGAAAGACAGGATATATAGATAGTTTTGCAGAT