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Detailed information on CNT30549812


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Ipomoea trilobaSetaria italica26.6412.1983.1142forward
CNT30514302Ipomoea trilobaJuglans regia26.2724.5281.43140forward
CNT30275526Ipomoea trilobaChenopodium quinoa27.226.2781.38145forward
CNT30249706Ipomoea trilobaAvena sativa27.222.3882.76145forward
CNT30470142Ipomoea trilobaSaccharum spontaneum26.6418.9880.28142forward
CNT30135597Ipomoea trilobaLolium perenne27.228.0581.38145forward
CNT30624138Ipomoea trilobaDaucus carota25.1425.1482.09134forward
CNT30597257Ipomoea trilobaOryza meridionalis27.229.0682.07145forward
CNT30355824Ipomoea trilobaLactuca sativa27.5818.8581.63147forward
CNT3053146Ipomoea trilobaAmborella trichopoda25.5221.5984.56136forward
CNT30108688Ipomoea trilobaOryza longistaminata27.225.8582.07145forward
CNT30104475Ipomoea trilobaOryza rufipogon27.225.882.07145forward
CNT30578401Ipomoea trilobaOryza barthii27.225.9482.07145forward
CNT30581754Ipomoea trilobaEchinochloa crusgalli26.6418.5680.28142forward
CNT30118085Ipomoea trilobaOryza nivara27.227.1582.07145forward

Expression of CNT30549812

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MIYDVNSPLFRSFLSQKGGGSDKRKTEEQKPKEQKPKANENKPVMNE*

>peptide 2 (31 aa)
MLLKLLINCFELYLASAVCCNVMFENSAASM*

Sequence

>CNT30549812
ATTGAATCAATCACTCTGACTTTTGAGCTACAGATCTAGTGAGCTTGCCGACAACCAAAAGTCTGAGCAGATCAAATATTAGGGTTTGTAATAAAGCAGA
TTTCAGCTTCGAGGGCGACGAGCTTCGCACAGTGACAATGATTTACGACGTCAACTCGCCGCTGTTCCGCTCGTTTCTCAGCCAGAAAGGAGGCGGTTCG
GATAAGAGGAAAACTGAAGAGCAAAAGCCAAAGGAACAGAAGCCTAAAGCGAATGAAAACAAGCCTGTTATGAATGAATAATAGCTTCCTGATTCACGCA
AATCCAGGCATTATAGAATGCTTTTGAAGTTGTTAATCAACTGTTTTGAACTCTATCTGGCATCTGCTGTGTGCTGTAATGTGATGTTTGAAAATTCTGC
TGCAAGTATGTAAACTATGGGCTGTTTTCTATCCTGAATTGCACTATATGAGATCAACTCTTCTACTAAATCTTCAATTGATTTGACAGATTTTACTAAA
TTTAGTCGGTGCTTTTAAGTTGTTGATGGATTG