Detailed information on CNT30549614


BLAST search results

BLAST vs Swiss-Prot:
sp|P07506|COX1_SOYBN, E-value = 3e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224837Ipomoea trilobaHordeum vulgare42.4710092.86392forward
CNT30436229Ipomoea trilobaAegilops tauschii20.6930.3294.76191forward
CNT30605231Ipomoea trilobaGossypium raimondii76.3818.8597.59705forward
CNT30205015Ipomoea trilobaHelianthus annuus28.9365.1297.38267forward
CNT30683126Ipomoea trilobaTriticum urartu74.549.1194.48688forward
CNT30371457Ipomoea trilobaOryza glumipatula45.8318.5395.04423forward
CNT30724803Ipomoea trilobaLupinus angustifolius20.9133.5196.37193forward

Expression of CNT30549614

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSGAPIRIGTDQLPDPPIIAGITIKNIIKKA*

>peptide 2 (31 aa)
MKYYLIVEMPCQAHLSESEQTNYQIHLSSPA*

>peptide 3 (39 aa)
MYIGSASCNEERLVVNRRLVQPRKTWEFLGVLILFLLLR*

>peptide 4 (42 aa)
MAPKMKYRVPISLWLVENSHRTGFVIKFRFFLKNVYWFRFLQ*

>peptide 5 (75 aa)
PPPAGSEKVVLKFRSVNNMVIAPASTGSDNKSGNAVTRTDHTNRGDLCIVIPGPRMLKIVVIKFIEPKMDETPDR*

Sequence

>CNT30549614
CTCCCCCTCCAGCGGGATCAGAAAAGGTTGTATTAAAGTTTCGATCGGTTAATAACATGGTAATTGCCCCTGCCAGTACCGGAAGTGATAATAAAAGTGG
GAATGCTGTCACTAGAACGGACCACACAAATAGAGGTGATCTATGCATAGTCATACCAGGTCCACGCATGTTGAAGATAGTTGTTATAAAATTTATAGAA
CCTAAAATGGATGAAACACCAGATAGATGAAGACTAGAAATTGCTGAATCAACTGCTCCACCAGAATGGCTGGTAATACCACTTAAGGGCGGATAGACCG
TCCACCCAGTTCCGCTACCCACTTCTACTAAGGCTGGGCTTAATAGGAGCAAGAGACTTGGAGGCAACAACCAGAATGAAATATTATTTAATCGTGGAAA
TGCCATGTCAGGCGCACCTATCAGAATCGGAACAGACCAATTACCAGATCCACCTATCATCGCCGGCATAACCATAAAAAATATCATTAAAAAAGCGTGA
GCCGTTATTAAAACATTATAAAGTTGATGATTCCCACCAAGAATTTGATCGCCGGGTCGTGCTAATTCCATACGAATCAGTACTGAGAAGCATGTGCCCA
TCACTCCAGCAATGGCACCGAAGATGAAATATAGAGTCCCTATATCCTTGTGGTTAGTGGAGAACAGCCATCGGACCGGATTTGTCATAAAATTTAGATT
CTTTCTTAAAAATGTATATTGGTTCCGCTTCTTGCAATGAAGAAAGACTTGTTGTAAATCGCCGGTTAGTCCAACCAAGAAAGACATGGGAGTTTTTGGG
CGTTCTGATTCTTTTTCTTCTATTACGATAAAACTAGTTGGATGAAAAGAGCGCTCCTAAATGAAGCCTTTCTCAACTATACGATACCGCAAAATGTTTC
TTCCTTCCTGATCCTTTCGCATG