Detailed information on CNT30549326


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30511569Ipomoea trilobaSolanum lycopersicum3.6935.3785.0687reverse complement

Expression of CNT30549326

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGKRRETPPWLQTSVSSGFALPRYRSHCL*

>peptide 2 (30 aa)
MLKFHEFRDEYGGGGGCGADEKEGGKGEEE*

>peptide 3 (44 aa)
MAANPVALVTYHSCLQGRPAMNALVFLCPINSRTSSSQPHDPHP*

>peptide 4 (41 aa)
MKKKKKKKINKGKQGWISTLTQNQTLNPHMYTGHIGLYSYS*

>peptide 5 (53 aa)
MNFVMSMVVAVAVAPMKKRAGRVKRNEKLPIARISAANTLGIKIAKQRYQTEP*

>peptide 6 (47 aa)
MKSKDGGSGLLHDWAKVEKHRHGCKHQLCACLPCQDTGFVISMPTKL*

>peptide 7 (71 aa)
MPNIEGLAKIVTMHKCLNFFSTASSGMKSKNVGSDLLYMNGQEERDTAMAANLSFIRICPAKIQITLPLSP*

>peptide 8 (66 aa)
MCMFTLPRYRFCYLNAHETLRKVLPPSQPTKINSDIKSISMSRKQCTLCNNNNNNNNKNSGWIANI*

>peptide 9 (85 aa)
MKVREYCKDKQSIIVRWILVLDSKRVIDFEESWGNHWQTNGQPPQENPIPMQPCFLPELKHCFHGQPIHNFIIIKIGLRCVFRQA*

>peptide 10 (38 aa)
MAANINYVHVYPAKIQVLLSQCPRNSKKGFATITAYQD*

>peptide 11 (36 aa)
MVEKTTPMAAIQIAHEIYLGITNRHAIKGSASLDAQ*

Sequence

>CNT30549326
CACACACACATTTACATATATATTAGTTCAACACATTCATGAAGAGTAAGGATGGAGGCTCAGGTCTTTTACATGATTGGGCAAAAGTAGAGAAACACCG
CCATGGCTGCAAACATCAATTATGTGCATGTTTACCCTGCCAAGATACAGGTTTTGTTATCTCAATGCCCACGAAACTCTAAGAAAGGTTTTGCCACCAT
CACAGCCTACCAAGATTAACAGTGACATTAAGAGTATTTCAATGAGCAGAAAGCAATGTACATTGTGTAATAATAACAATAACAATAACAACAAAAATAG
TGGGTGGATAGCAAATATATGATAATATGAAAGTGAGAGAGTATTGTAAGGATAAACAAAGCATAATAGTACGCTGGATTCTAGTACTAGATTCCAAAAG
GGTTATTGATTTTGAAGAGAGTTGGGGAAATCATTGGCAGACAAATGGGCAACCACCCCAAGAAAATCCCATCCCTATGCAGCCTTGTTTCCTTCCTGAG
TTGAAACACTGCTTTCATGGTCAACCAATACACAATTTTATTATTATCAAAATAGGGCTCAGATGTGTATTTAGACAAGCATAGTAGAGAAGACAACCAC
CATGGCTGCCAACCCAGTTGCACTAGTGACATATCACTCTTGCCTTCAAGGTCGCCCTGCCATGAATGCATTGGTTTTTCTATGCCCAATAAACTCTAGA
ACTTCATCTTCACAGCCCCATGATCCCCATCCATGAAAAATCAGAAAATGAGAACAAGGATAATCATGATTCATGAAGAAGAAGAAGAAGAAGAAGATAA
ATAAGGGGAAGCAGGGCTGGATATCAACCCTAACTCAAAACCAAACCCTAAACCCACATATGTATACAGGACACATTGGCCTGTATTCATATTCATGAAC
AGATACTACATATTGTAATAGAGTCAGAGTCAGTAGTACTCAAAAAAAAAATGTAAGGGTTGTTAATTGCTGAAATACAGACATACAGAGATGGGCAACC
ACCCTTAAAAAGCCCCAAAATCTCCTACACCATCATTCATTTCTGAGCTGAGAAAACTGAAAGGAATTAAATCTCATGAGAGAGATTTGATGCAAAGTGT
ACAAAAGTTCCATGCCAAATATAGAAGGTTTGGCCAAAATTGTCACAATGCATAAATGTTTGAATTTTTTTTCAACAGCATCTTCTGGAATGAAGAGTAA
GAATGTAGGCTCAGATCTTCTATATATGAATGGGCAAGAGGAGAGAGACACCGCCATGGCTGCAAACCTCAGTTTCATCCGGATTTGCCCTGCCAAGATA
CAGATCACATTGCCTCTAAGCCCATGAAACTCTAAACAGCTCTTACTACCATCATCACAGCCTATTGGTGGGAAAGCAACAACACCTCTAATAGAAGCGT
CAATTGCAAATTAATAAATTGTTATACCATGGACCATAAAGGACAGCAAATATATCGTTATACCATGGACCAGAAAGCATAGCACATATATACTAGTACT
ACACCGTACTGCATTTCAAAAGGGTAATTGATTTTGACGATTAGGGGAAATCATTGGTATGCAGAGGGGAGAAATCACCCTTAGAAACTTCGCATCCCCC
TGCAGCCTCTCAGAGGATTAGAGCGTGTGGCGAAAAACTACATTGTCGAGGGTCCGAATCCCTCCTCGCCCACAACCGGCCTAAAGGGAAGTACTTTCCC
CCTAGTGGTGTGGCAATCATGGTCTAGTGGTGTGGCAATCATGGTCGGAATAGCGAACCAAATTGGACCTGATCTTTCCTTCATGAGCTGAAACTCATTT
ACTATAGATCCAATTTTATCATCAAAATGAGTCTCAGATCTGTCATTTAGACAGGCATGGTAGAGAAGACAACCCCCATGGCTGCAATCCAGATCGCACA
TGAGATATATCTCGGGATCACAAATCGCCACGCCATAAAGGGATCAGCTTCTCTCGATGCCCAGTGAACTCTAGAAATTCATCATCACTGACTCACACGT
AACCGAAAATCACTGGTTAATCAGATGCTTAAGTTCCATGAATTTCGTGATGAGTATGGTGGTGGCGGTGGCTGTGGCGCCGATGAAAAAGAGGGCGGGA
AGGGTGAAGAGGAATGAGAAGCTGCCGATTGCTCGGATCTCAGCAGCCAATACGCTAGGGATAAAGATAGCTAAACAGCGATACCAAACAGAGCCATAGA
TAGATCATAGATATATACATACATACATAATAAGGGTTGTTTACATTGTGGAAAAATCATCGGCTTACAGAGACGGGCAACCACCCTTAGAAATCCCCAT
GGCTCTCTGCAACCTCATTCTTCTCCAGAATCCACTGTTGACGAGAGGAGTGAAAAGCCC