Detailed information on CNT30549214


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 3e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710470Ipomoea trilobaGlycine max16.6920.482.14112forward
CNT30565935Ipomoea trilobaActinidia chinensis36.5150.4181.22245forward
CNT30509419Ipomoea trilobaSolanum lycopersicum22.2112.1179.87149forward
CNT30243815Ipomoea trilobaAvena sativa16.5437.2586.49111forward
CNT30463851Ipomoea trilobaSaccharum spontaneum37.2642.1680.4250forward

Expression of CNT30549214

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MGHSTAQQRSNLSDYLGRNLLTVAGGEPGANGVTVIHDSSERVRRRVGGEPLLDGEELLTAGLMDAGDGDLDVVTVPAVIFAGSIGG*

>peptide 2 (40 aa)
ETFVILPYQITYRYGKTLGLIYSQGPYQALSISPVGNRTH*

>peptide 3 (31 aa)
RHSLFYHIKSPIDMERHWALYTPKAHIKPYL*

Sequence

>CNT30549214
GAGACATTCGTTATTTTACCATATCAAATCACCTATAGATATGGAAAGACATTGGGCCTTATATACTCCCAAGGCCCATATCAAGCCCTATCTATAAGCC
CAGTAGGCAATAGAACACATTGATACACTCATACAATAAATAATGGGCCACTCTACAGCCCAACAACGCTCAAATCTCAGCGATTATTTGGGAAGAAATC
TTCTCACCGTCGCCGGCGGCGAGCCGGGAGCGAACGGAGTAACAGTTATCCACGATAGCAGTGAGCGTGTACGGCGACGTGTCGGTGGCGAGCCACTGCT
CGACGGTGAAGAGCTGCTGACTGCAGGCCTGATGGACGCCGGTGACGGTGACCTCGACGTAGTTACAGTACCAGCCGTGATTTTTGCCGGATCCATCGGA
GGTTAGGTTCATGGAGCAGATCGGAGAACTCAAGCAGGGGCCGCGGCCGCTGAAAATGTCGAGATTACCCCTCTCGAAGTAGTCGTAGCCCTCGCCCATA
AGCCCGCCCCACGCCTCCAGGTTGTTGATCCGTACACCGTAACCGTCGGCATCGTAGAGAGTCAAACTGATGATCGAGTCCGTTCCGCCCTTCCAAACGG
TTCCGGTTCGGATGTACGCCGTGTAGACGCAATCTGCATCATCCTACAGATCTCCGATCTGTCACTGTTGC