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Detailed information on CNT30549210


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT002185, E-value = 7e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Ipomoea trilobaOryza sativa34.3514.7284.73406forward
CNT30501657Ipomoea trilobaCoffea canephora61.5114.7995.74727forward
CNT30220028Ipomoea trilobaHordeum vulgare34.2630.0985.19405forward
CNT30592607Ipomoea trilobaMusa acuminata7.4520.7592.0588forward
CNT30207841Ipomoea trilobaHelianthus annuus62.1827.4491.02735forward
CNT30687453Ipomoea trilobaTriticum urartu34.267.5784.69405forward
CNT30154898Ipomoea trilobaPrunus persica48.732.488.54576reverse complement
CNT30574571Ipomoea trilobaVitis vinifera64.8912.4789.31767forward
CNT3052251Ipomoea trilobaAmborella trichopoda51.1810.3181.32605forward
CNT30495778Ipomoea trilobaDigitaria exilis27.577.7586.77325forward
CNT30115707Ipomoea trilobaOryza nivara34.359.3284.73406forward
CNT30175599Ipomoea trilobaVigna angularis62.7745.9789.08742reverse complement

Expression of CNT30549210

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MAFSDRGSLLQAPPNLYKVLLAFSQPLVAYVVVGIPTCSSLPPYLRIQRLPGSRFMDGFSQRKSLQLNQYQQHVVTG*

>peptide 2 (85 aa)
MEAGGLEVRPGFFGVVGEGLTFLTHIQSYRHGPTDLFSIGTSSSATRFYLTKPVLLQGESLLYPTPFLITRQKSPTRHSLVSNEE*

Sequence

>CNT30549210
ATCGATATACATATATAACCAACCTCACAGATCCAACTAAATCTTTTACACCGATGTATCGTACTCTCGCGACCGGGTCATCATAAGAAAAGACTGCTAA
ATCTTTCCGAAGTGAGAGAAGGAGGGAAGACGCGCTACAACTAACATAACAGCCAGCTGAAAAACGTTAGCTAGCTAGGCTAGCGCGCAATGGCTTTCTC
TGATAGGGGCTCGCTTCTTCAAGCTCCGCCCAACCTATACAAGGTGCTGCTCGCTTTCTCTCAGCCACTAGTGGCTTATGTAGTGGTCGGCATTCCTACG
TGCTCCTCCTTGCCCCCCTACTTAAGAATCCAAAGGTTACCGGGGTCTAGGTTTATGGATGGATTCAGTCAGCGAAAGTCCCTCCAACTCAATCAATATC
AACAACATGTCGTGACCGGTTAGGCTTGGTTTCTTTTTTCATAAAATAAAGTAGGTTTCGGGGCTTCATTGATTAGTACACCTCAGGTGCTGGTAAGGTC
GGGACCGTGGTCGCCCGTCTCCGGTTTGCCGGCCGATAAGATCTCTGAGATTGACCAGCCAGCTGGGTTGGTTTGGCTATTCTTTTCTATTGAAAAGGAG
TCAGCTGTCTGCGCGAGTCACCTTCTTCTAGGCTCCGCTGGACGACACGGCATTTTCGTTCAAATATAGGCCGGCCGTACTTGTGATGGTTCCCAAGGAT
CCAATATGACCACTTAGGTCTACGTTGCCACGATATTTTTCTATGGAAGCGGGCGGGTTAGAAGTTCGGCCCGGTTTTTTTGGTGTCGTAGGGGAGGGGT
TGACCTTTCTAACGCATATTCAGTCGTACCGGCATGGCCCCACTGATTTGTTTTCGATCGGAACATCAAGCAGCGCAACCCGGTTCTACTTGACTAAGCC
CGTGCTCCTCCAAGGAGAGAGTTTGCTTTACCCAACTCCCTTTTTGATAACAAGGCAGAAATCCCCGACCCGACACTCGTTAGTTTCAAATGAAGAATGA
ATGGTGCCCTAGCAAGCACCTACTCCTATCAAAAAGCTTGACTTTACTAAACAAGCAACGGTAAAGGGCTTTGCCTCCAACAAGCAAGGGCTGAGCTACC
GCGAAAGCCGTTGCGCTAACGCGCATCCGTTTCCTTGGTGCAGCAAGAAAACTCCTGCGCCTTTATAATGCTTTCGCGGTAG