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Detailed information on CNT30549115


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FIU6|ORRM2_ARATH, E-value = 3e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30574446Ipomoea trilobaVitis vinifera43.4429.5881.13265forward

Expression of CNT30549115

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MMAIHASNCTIGLLNIIILDKTITFRLTSDTIFYNLGHHNGAKRREQIDQAIIIKCRRQIPNIQVRLIILLRLDHS*

>peptide 2 (40 aa)
MVEGIAFHKEEQVDQELENTQLNQEVEVEVGRGDKEGEDM*

>peptide 3 (42 aa)
MVPKGENKLIKPSSSSVGGKYPIYKFVSSYSLGLITVDPKPG*

>peptide 4 (31 aa)
VTLLLTTRSAVTLLCFIRGSCLSRGTSGCSR*

Sequence

>CNT30549115
GGGTAACTTTGCTGCTGACTACCAGAAGTGCTGTAACTTTGTTGTGTTTCATTAGAGGGAGCTGTTTGAGTAGAGGCACCAGTGGTTGCAGTAGGTAATG
GTGGAGGGTATTGCATTCCATAAGGAGGAACAGGTTGACCAGGAACTGGAGAATACACAGCTGAACCAGGAGGTGGAGGTGGAAGTGGGTAGGGGGGATA
AGGAGGGGGAGGATATGTAGGAATAGCAGGAGCTGGAGGGCCTGGAGGGACAGTAGGCTGAGGGGGCTTACCAGCAACTCTCACAGCAATAGTTCTACCA
TCCAGATGATGGCCATTCATGCTAGCAATTGCACTATTGGCCTGCTGAACATCATCATACTTGACAAAACCATAACCTTTAGACTGACCAGTGACACGAT
CTTTTATAACCTTGGCCATCACAATGGTGCCAAAAGGAGAGAACAAATTGATCAAGCCATCATCATCAAGTGTAGGCGGCAAATACCCAATATACAAGTT
CGTCTCATCATACTCCTTAGGCTTGATCACAGTTGACCCTAAACCAGGATGAGAAGAGCCACCAACCCCACCAGTGCTGCTACCAGTGGCCCAAGGAGGA
TTCCCACTTG