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Detailed information on CNT30549062


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000854, E-value = 3e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523685Ipomoea trilobaSetaria italica23.7548.8988.64176reverse complement
CNT30725731Ipomoea trilobaLupinus angustifolius43.7221.6494.75324forward

Expression of CNT30549062

Peptides detected in this lncRNA

>peptide 1 (37 aa)
EKYRGNVDLSGHIGSLGTITSTAGLYLNENAVSSSGA*

>peptide 2 (50 aa)
KISWQRRPKWSYWILGNHHKYGRPIFERKCRVVQRSLEEGDSRRQLTPFQ*

Sequence

>CNT30549062
GAAAAATATCGTGGCAACGTAGACCTAAGTGGTCATATTGGATCCTTGGGAACCATCACAAGTACGGCCGGCCTATATTTGAACGAAAATGCCGTGTCGT
CCAGCGGAGCCTAGAAGAAGGTGACTCGCGCAGACAGCTGACTCCTTTTCAATAGAAAAGAATAGCCAAACCAACCCAGCTGGCTGGTCAATCTCAGAGA
TCTTATCGGCCGGCAAACCGGAGACGGGCGACCACGGTCCCGACCTTACCAGCACCTGAGGTGTACTAATCAATGAAGCCCCGAAACCTACTTTATTTTA
TGAAAAAAGAAACCAAGCCTAACCGGTCACGACATGTTGTTGATATTGATTGAGTTGGAGGGACTTTCGCTGACTGAATCCATCCATAAACCTAGACCCC
GGTAACCTTTGGATTCTTAAGTAGGGGGGCAAGGAGGAGCACGTAGGAATGCCGACCACTACATAAGCCACTAGTGGCTGAGAGAAAGCGAGCAGCACCT
TGTATAGGTTGGGCGGAGCTTGAAGAAGCGAGCCCCTATCAGAGAAAGCCATTGCGCGCTAGCCTAGCTAGCTAACGTTTTTCAGCTGGCTGTTATGTTA
GTTGTAGCGCGTCTTCCCTCCTTCTCTCACTTCGGAAAGATTTAGCAGTCTTTTCTTATGATGACCCGGTCGCGAGAGTACGATACATCGGTGTAAAAGA
TTTAGTTGGATCTGTGAGGTTGGTTATATATGTATATCGAT