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Detailed information on CNT30548924


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104648Ipomoea trilobaOryza rufipogon36.8179.2597.62462reverse complement

Expression of CNT30548924

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MWFNSIQRAKPYQPLTYEQENLSLTGWYLLSYRCCMAVVSSCREMFGQVL*

>peptide 2 (47 aa)
MTSSPHGPYGLGHTRATMAITMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 3 (53 aa)
MLSKPIHLSETEESGISCVRGEIQRSTKERQKRRQLSGSLPTLRCESMGSEQD*

>peptide 4 (40 aa)
MKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGLMI

Sequence

>CNT30548924
TGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGT
GAGACAGAGGAGAGTGGAATTTCGTGTGTTAGGGGTGAAATCCAGAGATCTACAAAGGAACGCCAAAAGCGAAGGCAACTCTCTGGGTCCCTACCGACGC
TGAGGTGCGAAAGCATGGGGAGCGAACAAGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCCC
AGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAA
TTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAAGAAAACCTGTCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCATGGCT
GTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCCTAAGGAGAAAGTCTTTGCA
ACCGAAGTGAGCCGAGGAGCCGAGTGACGTGCCAGCGCTACTAATTGAGTGCCAGCACCTAGCTGTGCTGTCAGTAAGAAGGTAGCCGGCGCCTTTCGAA
GCACTTTCTAGTTAGCGCTTTAGTTTGATTGCAGCTAGCGCGCTTGACTAAAGAAAGGGCTTCATTTACTGCTTTGTTTCTTGTTTAGTAAAGTCAAGTT
TTTGGCCTTATCTTGCAGGTGACGACGACGTCGAGTTGACGGCAGAGAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTA
GTACGCCCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACTAAGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCA
AGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCTGGAAAGATTGCCT
CAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACAC
ACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACTAATGATCA