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Detailed information on CNT30548882


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Ipomoea trilobaOryza sativa37.6331.6698.59992reverse complement
CNT30524653Ipomoea trilobaSetaria italica12.2226.8899.38322forward
CNT30304298Ipomoea trilobaTriticum aestivum37.6337.4998.29992reverse complement
CNT30221494Ipomoea trilobaHordeum vulgare21.9346.5498.27578forward
CNT30400948Ipomoea trilobaTriticum turgidum37.6339.6898.49992reverse complement
CNT30585815Ipomoea trilobaMusa acuminata38.9242.2795.131026forward
CNT30147394Ipomoea trilobaMedicago truncatula44.0858.3398.111162forward
CNT30440683Ipomoea trilobaAegilops tauschii29.7881.2698.6785forward
CNT30247816Ipomoea trilobaAvena sativa26.7133.798.72704forward
CNT30662061Ipomoea trilobaTriticum dicoccoides37.6351.6998.59992reverse complement
CNT30143344Ipomoea trilobaLolium perenne41.1648.597.881085reverse complement
CNT3016633Ipomoea trilobaZea mays41.2756.9395.51088reverse complement
CNT30229838Ipomoea trilobaAnanas comosus16.84100.2396.85444reverse complement
CNT30655299Ipomoea trilobaRosa chinensis41.6538.6998.181098forward
CNT30689128Ipomoea trilobaTriticum urartu37.6353.3697.88992forward
CNT30721611Ipomoea trilobaTriticum spelta8.548.5999.11224reverse complement
CNT30575706Ipomoea trilobaOryza barthii36.3839.3596.35959forward
CNT30582488Ipomoea trilobaEchinochloa crusgalli37.6381.7198.89992forward
CNT30116696Ipomoea trilobaOryza nivara37.6325.0298.69992reverse complement
CNT30604605Ipomoea trilobaOryza punctata3.2637.2391.8686reverse complement

Expression of CNT30548882

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTSSPHGPYGLGHTRATMAITMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 2 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 3 (60 aa)
MKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHDFCVTLVPQRLLVVLLA*

>peptide 4 (53 aa)
MLSKPIHLSETEESGISCVRGEILRSTKERQKRRQLSGSLPTLRCESMGSKQD*

>peptide 5 (50 aa)
MWFNSIQRAKPYQPLTYEQENLSLTGWYLLSYRCCMAVVSSCREMFGQVL*

>peptide 6 (47 aa)
MTSSPHGPYGLGHTRATMAITMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 7 (39 aa)
MKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGLM

>peptide 8 (40 aa)
MTGLEEEAPANSVPAAAVRRGGQVFFGMTGRKGHVGGESG*

>peptide 9 (31 aa)
MQVERCFRGAGHKEKRLLAKGSLSRPGGEKS*

Sequence

>CNT30548882
GACGTGCTAGCGCTACTAATTGAGTGCCAGCACCTAGCTGTGCTGTCAGTAAGAAGGTAGCCGGCGCCTTTCGAAGCACTTTCTAGTTAGCGCTTTAGTT
TGATTGCAGCTAGCGCGCTTGACTAAAGAAAGGGCTTCATTTACTGCTTTGTTTCTTGTTTAGTAAAGTCAAGTTTTTGGCCTTATCTTGCAGGTGACGA
CGACGTCGAGTTGACGGCAGAGAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCCCCGCCAAAACGGCTCCGA
AACAAACAAAAAGGTGCGTGCCGCACTCACTAAGGACTGCTAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGG
GCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTC
GGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTG
GTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCTGTGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGTGATCCTGGCTCAG
AAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCATAAGGAAAAGAGGCTCCTAGCTAAAGGTAGCTTGTCTC
GCCCAGGAGGTGAGAAGAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTAAAA
AGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACAC
TGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAG
GGCAGTGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACG
GGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAACTGGCGGAATGCTCTCG
AAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTTAGGGGTGAAATCCTGAGATCCACGAAGGAACGCCAAAAGCGAAGGCAGCTCT
CTGGGTCCCTACCGACGCTGAGGTGCGAAAGCATGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTC
TACGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCG
GTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAAGAAAACCTGTCCTTAACGGGATGGTACTTACTTTCA
TACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCCT
AAGGAGAAAGTCTTTGCAACCGAAGTGAGCCGAGGAGCCGAGTGACGTGCCAGCGCTACTAATTGAGTGCCAGCACCTAGCTGTGCTGTCAGTAAGAAGG
TAGCCGGCGCCTTTCGAAGCACTTTCTAGTTAGCGCTTTAGTTTGATTGCAGCTAGCGCGCTTGACTAAAGAAAGGGCTTCATTTACTGCTTTGTTTCTT
GTTTAGTAAAGTCAAGTTTTTGGCCTTATCTTGCAGGTGACGACGACGTCGAGTTGACGGCAGAGAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTG
TGGTACGTAGTGGGTTTAGTACGCCCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACTAAGGACTGCCAGTGATATACTGGAGG
AAGGTGACGACGACGTCGAGTTGACGGCAGAGAAAGACTCGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCCCCGCCAAA
ACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACTAAGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCT
TATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCTGGAAAGATTGCCTCAGTTCGGATTGTTC
TCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACC
CTGGGAATTGGTTTCGCCCGAAGCATCGGACTAATG