Detailed information on CNT30548565


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30220785Ipomoea trilobaHordeum vulgare34.3114.7194.51164reverse complement
CNT30553404Ipomoea trilobaOryza glaberrima34.3111.6194.51164forward
CNT30576076Ipomoea trilobaOryza barthii34.313.6594.51164forward

Expression of CNT30548565

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGCFSNSLPRMPSLALAMASVVMNSKLYQSLN*

>peptide 2 (36 aa)
MQVERCFRGAGHKEKRLLAKGSLSRPGGEKSENKVAN

Sequence

>CNT30548565
GAAAGAAAGGAACGTTTCCCCCCGGAATCCCCCTCGGGGGGAAGGCAGGGTTGTTTAGAGAAATTCTTCCAATAGCGAGGATATAAAAGTGAAAGATACA
AGTAGCGATGGGATGTTTCTCCAATAGCCTGCCCCGAATGCCTTCTCTGGCCCTCGCTATGGCGAGCGTGGTGATGAACTCTAAACTCTACCAATCACTA
AACTAAACAATAAAGAATAAAGAAAATCATAAGAGAAGCAAAGTTCACAGAAGGTTGGGAAATAGTACGCCCGGTTCACCAGGTTCTACCACTGCAGGGC
CCAATCATACTCAAAAGAAGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCA
TAAGGAAAAGAGGCTCCTAGCTAAAGGTAGCTTGTCTCGCCCAGGAGGTGAGAAGAGTGAGAACAAAGTGGCGAACGG