Detailed information on CNT30548039


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 1e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379045Ipomoea trilobaManihot esculenta29.9326.9381.4129forward
CNT30488043Ipomoea trilobaOlea europaea23.6724.8886.27102forward
CNT30639107Ipomoea trilobaCapsicum annuum23.4324.1683.17101forward
CNT3095919Ipomoea trilobaSolanum tuberosum25.5225.9486.36110forward
CNT30599147Ipomoea trilobaFraxinus excelsior16.0121.7789.8669forward
CNT30623801Ipomoea trilobaDaucus carota20.8812.6285.5690forward
CNT3039001Ipomoea trilobaCucumis melo24.8322.3884.11107forward
CNT30334721Ipomoea trilobaCynara cardunculus32.2519.885.61139forward

Expression of CNT30548039

Peptides detected in this lncRNA

>peptide 1 (80 aa)
FAFEAFWDLLSTVVEDQAEGEGNIKVNTQNIGFNGGAKANSGLKIHKTVDERAAMGLCRTADNKVDQVVQEVGHFALPWW*

>peptide 2 (36 aa)
MVVTMAVAARWGWWARDIGGANHCEEEDVQSEEKGK*

>peptide 3 (98 aa)
SHLKPSGTFFPQLLRTKLRERGTLRLIPKTLALMAVQRQTAASRSTRPSMRGQQWAFAGLPTTRWTRSFKRLGISPCHGGDHGRGRSMGVVGKGHWWS*

>peptide 4 (37 aa)
MFKVRRRASDATLAIFFFSNSTKGFFFLAQKMAICLA*

Sequence

>CNT30548039
ATTCGCATTTGAAGCCTTCTGGGACCTTCTTTCCACAGTTGTTGAGGACCAAGCTGAGGGAGAGGGGAACATTAAGGTTAATACCCAAAACATTGGCTTT
AATGGCGGTGCAAAGGCAAACAGCGGCCTCAAGATCCACAAGACCGTCGATGAGAGGGCAGCAATGGGCCTTTGCAGGACTGCCGACAACAAGGTGGACC
AGGTCGTTCAAGAGGTTGGGCATTTCGCCTTGCCATGGTGGTGACCATGGCCGTGGCCGCTCGATGGGGGTGGTGGGCAAGGGACATTGGTGGAGCTAAC
CATTGTGAAGAAGAGGATGTTCAAAGTGAGGAGAAGGGCAAGTGATGCAACCTTAGCCATTTTTTTTTTTTCAAATTCAACAAAGGGTTTTTTTTTTTTA
GCTCAAAAAATGGCTATTTGCTTGGCTTGAG